GBrowse Details

Vigan.01G394000.01

Basic Information:
Name: Vigan.01G394000.01
Multiple alignment
Variant Information
Position: Chr01:53310021..53314783 (+ strand)
Length: 4763
Functional Information:
Description: Similar to Nucleoside diphosphate kinase. [V7CBD1, Phaseolus vulgaris]
GO: Biological Process: nucleoside diphosphate phosphorylation (GO:0006165)
Biological Process: GTP biosynthetic process (GO:0006183)
Biological Process: UTP biosynthetic process (GO:0006228)
Biological Process: CTP biosynthetic process (GO:0006241)
Molecular Function: nucleoside diphosphate kinase activity (GO:0004550)
Molecular Function: ATP binding (GO:0005524)
InterPro: Nucleoside diphosphate kinase (IPR001564)
Nucleoside diphosphate kinase, active site (IPR023005)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.97,29.80,22.33,45.22,19.03,34.85,15.03,11.02
Arabidopsis thaliana homolog: AT5G63310.1
Automatic updates:
Name: BT091410 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-7L24 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254588 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nucleoside diphosphate kinase 2, chloroplastic-like (LOC100811753), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:53310021..53310144 (+ strand)
Length: 124
Type: five_prime_UTR
Position: Chr01:53310145..53310369 (+ strand)
Length: 225
Type: CDS
Position: Chr01:53310469..53310525 (+ strand)
Length: 57
Type: CDS
Position: Chr01:53310716..53310802 (+ strand)
Length: 87
Type: CDS
Position: Chr01:53311731..53311811 (+ strand)
Length: 81
Type: CDS
Position: Chr01:53311902..53312014 (+ strand)
Length: 113
Type: CDS
Position: Chr01:53312164..53312213 (+ strand)
Length: 50
Type: CDS
Position: Chr01:53313432..53313499 (+ strand)
Length: 68
Type: CDS
Position: Chr01:53313500..53314783 (+ strand)
Length: 1284
Type: three_prime_UTR


>Vigan.01G394000.01
TTACCATTGT GTGTATAAAG AAGATAAAAA TTTATTTAGA ACATATCCAA AGAAAGAAGA AAGAGAGAAG AACTGTGTTC
TTAGCCGTAG TTTTGTCTGT TTGTGAGGTG AGGCGCAGAC GAAGATGGAA GTTGTGTGTG GAAGTGGGGT TTGCGTCTCA
TCTCTTCCGC GCTCATCAAC GATTACCAGA AGCACTGTTC CTCAATTCCG AGTCAGTTAC CAATACCTAA CACCGTTTCC
TTCACAATCC CATCTATTCT CCTATCACCC TCCGCCCTAT GCTAAAACCC TCCGTGCCAG AACCACCACC AAACCCGCTA
TTTTCCTTCC CCACTTAGTT GCATCTCTGC AGCAAGTTGA CCAGACTTAC ATAATGGTGA AGCCCGACGG CGTGCAACGT
GGCCTCGTCG GAGAAATTAT TTCTAGGTTT GAGAAGAAGG GGTTTAAGTT GACTGGCTTG AAGCTCTTCC AGTGCTCTAA
AGAGTTAGCT GAGGAGCATT ACAAGGACCT AAACCAAAAG TCATTCTTCC CCAAGCTCAT TGACTATATT ACTTCTGGTC
CTGTTGTTTG TATGGCTTGG GAGGGTGTTG GAGTAGTGGC ATCCGCACGT AAGCTTATAG GGGCTACTGA TCCTCTTCAA
GCTGAACCAG GCACAATAAG AGGAGACCTT GCTGTTCAAA CAGGAAGGAA TGTAGTTCAT GGCAGTGACA GTCCCGAAAA
TGGAAAGCGT GAAATAGCTC TATGGTTCAA GGAAGGCGAA TTATGCGATT GGACCCCCGT TCAAGCACCG TGGCTGAGAG
AATAATGAAT CACAGATTTC CAGTTCCAAT ATTCATGCCA TTTCTAGTTT CAATAATGTA TCAATTGTTT TCGGCCTCAA
ATGTAGAACT ACATTAATTG TTGCTTAAAT TTTGTTAAAT TTTGCTGGAC TCGGATTCTT CTAGCCCATG CCATTTTCTT
TTTCTGTCAT GTCAGATTTA AACGGGTGAT GTGATTGAAG AATAATAGAA AATCTACCAT CTAGTGAAAT TTGCTCCTGA
AAGTGAGTCG AACCAGTGAA CAAGAATAAT GACTGCGACA GGCAAAAGAT TTTAACTAGC ATTTATACTT GAAACAAAAC
TGGTCCACAC CTGAATGTAA ACAGAAGAAT GGGATATAAT ACAACAGCTG GAAATAATTT GCATGGAACA GTGGCAGGTA
TACATATTTG TGTTGCTCAC TTCATTGCTT CCAGGTCATG ATAAATACAA CTCTAATCCG ACATTTCACA ATCTTGCAAA
ATTTGGACAC CGACCACTTC ATTTCTGCAA TCATAATCAA CAGAAGTTGA CGAGATACAT TCAGAACTTC CATTCTCCGA
TGAAGTTGTT GTCTTTGCAG AAGATGAAAC ATCCACATCT CCGGTATTCA CCACTCTAAA GAAATCTAGA ATGGTAAGAT
TAACTTGCCT TCGCAGTTCC GAGTTCCCAC TAGAAACAAT ATCACTAACC CTGGGAGAAG AGTTATCAGA CTCTGTATCC
ATCATCGTTT TCTCGGAACA TGAAGTGCTC TCTGGATTAA AATCTGGCTG ATTTGCTTCT TTAGCACAAG GTGAACTAAC
TGAAGAATCG TCTATAACCT CACTTGTATC GAGTCGCGCA CCAATCTTTA GCTTCATGAG AGTAGCCTCT GAATCGAAAA
GATATTATCA AGCCACATAC GCAAACAGTG TTGAGTGCGT AATTAAATCA ATAACCTAAA TTTTGTTTAA GCGAATTGAA
AGAGAGAGAG GGAGAGAGTG TGTACCGTAG ATGGAGAAGG TGTCATCTTT GAGAATCTTG GAAGGAGAAC CCTCTAATGT
TTCCAGTGAC GAAGTCGATG CCCTGATTCT GCCGAACATT TGTGATGCTA TCTTCGCTTC GGTTCTGTGC GCGTCGGGTA
TTCCGAAACG AAAAGATCAG AGAAAAGCAT AAATAGAGAG AGAAGCAGAA TTTTTGTTGG CGCCCTTTTT GTATTGAATT
ACGGAATTAG AGCGGGAATC GTACCCCGCA CTCTTCTTTT TCTAGAACTC AACCAAGTAC CGGCTCTCTT TTGGGCTGGG
CCCTAGCCC

>Vigan.01G394000.01
ATGGAAGTTG TGTGTGGAAG TGGGGTTTGC GTCTCATCTC TTCCGCGCTC ATCAACGATT ACCAGAAGCA CTGTTCCTCA
ATTCCGAGTC AGTTACCAAT ACCTAACACC GTTTCCTTCA CAATCCCATC TATTCTCCTA TCACCCTCCG CCCTATGCTA
AAACCCTCCG TGCCAGAACC ACCACCAAAC CCGCTATTTT CCTTCCCCAC TTAGTTGCAT CTCTGCAGCA AGTTGACCAG
ACTTACATAA TGGTGAAGCC CGACGGCGTG CAACGTGGCC TCGTCGGAGA AATTATTTCT AGGTTTGAGA AGAAGGGGTT
TAAGTTGACT GGCTTGAAGC TCTTCCAGTG CTCTAAAGAG TTAGCTGAGG AGCATTACAA GGACCTAAAC CAAAAGTCAT
TCTTCCCCAA GCTCATTGAC TATATTACTT CTGGTCCTGT TGTTTGTATG GCTTGGGAGG GTGTTGGAGT AGTGGCATCC
GCACGTAAGC TTATAGGGGC TACTGATCCT CTTCAAGCTG AACCAGGCAC AATAAGAGGA GACCTTGCTG TTCAAACAGG
AAGGAATGTA GTTCATGGCA GTGACAGTCC CGAAAATGGA AAGCGTGAAA TAGCTCTATG GTTCAAGGAA GGCGAATTAT
GCGATTGGAC CCCCGTTCAA GCACCGTGGC TGAGAGAATA A

>Vigan.01G394000.01
MEVVCGSGVC VSSLPRSSTI TRSTVPQFRV SYQYLTPFPS QSHLFSYHPP PYAKTLRART TTKPAIFLPH LVASLQQVDQ
TYIMVKPDGV QRGLVGEIIS RFEKKGFKLT GLKLFQCSKE LAEEHYKDLN QKSFFPKLID YITSGPVVCM AWEGVGVVAS
ARKLIGATDP LQAEPGTIRG DLAVQTGRNV VHGSDSPENG KREIALWFKE GELCDWTPVQ APWLRE*