GBrowse Details

Vigan.01G396600.01

Basic Information:
Name: Vigan.01G396600.01
Multiple alignment
Variant Information
Position: Chr01:53550932..53554700 (+ strand)
Length: 3769
Functional Information:
Description: Similar to serine/threonine-protein kinase AFC2-like. [XP_004515857.1, Cicer arietinum]
GO: Biological Process: protein phosphorylation (GO:0006468)
Molecular Function: protein kinase activity (GO:0004672)
Molecular Function: protein serine/threonine kinase activity (GO:0004674)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro: Protein kinase domain (IPR000719)
Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
Serine/threonine-protein kinase, active site (IPR008271)
Protein kinase-like domain (IPR011009)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:160.22,125.85,49.84,72.94,39.65,31.91,59.31,60.43
Arabidopsis thaliana homolog: AT3G53570.1, AT4G24740.1, AT4G32660.1
Automatic updates:
Name: NM_001255351 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein kinase AFC2-like (LOC100804452), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255690 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein kinase AFC2-like (LOC100804022), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:53550932..53551064 (+ strand)
Length: 133
Type: five_prime_UTR
Position: Chr01:53551065..53551163 (+ strand)
Length: 99
Type: CDS
Position: Chr01:53552023..53552215 (+ strand)
Length: 193
Type: CDS
Position: Chr01:53552522..53552702 (+ strand)
Length: 181
Type: CDS
Position: Chr01:53552806..53552854 (+ strand)
Length: 49
Type: CDS
Position: Chr01:53552944..53553058 (+ strand)
Length: 115
Type: CDS
Position: Chr01:53553256..53553347 (+ strand)
Length: 92
Type: CDS
Position: Chr01:53553603..53553753 (+ strand)
Length: 151
Type: CDS
Position: Chr01:53553851..53553915 (+ strand)
Length: 65
Type: CDS
Position: Chr01:53553996..53554093 (+ strand)
Length: 98
Type: CDS
Position: Chr01:53554176..53554278 (+ strand)
Length: 103
Type: CDS
Position: Chr01:53554377..53554523 (+ strand)
Length: 147
Type: CDS
Position: Chr01:53554524..53554700 (+ strand)
Length: 177
Type: three_prime_UTR


>Vigan.01G396600.01
CACGGTCGTT ATTATTGGGC TAACATCGAG ATTAGGGTTT CAGAAGCTGA GGCTCTATCT TCACACAAGC ATATTTTCTC
TTTCATCTTA ATCTGTCTTT CTCTACTTTG AAGTTTTCGT AGTTGTTCGA ATCATGGAGA TGGAACGCGT TTTCGAATTT
CCCCATTCTC ATATGGATCG GCGACCGAGA AAGAGAGCGA GGTTGGGCTG GGACATTCCT GAGGTCCCTA AGGCTCAGGT
AGGATTGTTT TGTGGACAAG ATGTTGGGGC TATTTCAAGC TATGCTCCTT CAAGGGGTCC CTCAGAACAT ACCACTTGTT
CCCTATTTGT TAAGGCTGTT GCTCAAAATG GTTCTCCCCC TTGGCGAGAT GATGACAAAG ATGGACATTA CATGTTTGCG
CTTGGAGATA ATTTAACTTC TCGCTATAAG ATCCATAGCA AAATGGGTGA AGGAACTTTT GGGCAGGTCT TAGAATGCTG
GGACCGAGAA AGGAAGGAAA TGGTTGCGAT TAAAATTGTC CGTGGGATAA AGAAGTATCG AGAAGCAGCC ATGATAGAAA
TTGAGGTGCT TCAACAGCTT GGTAAACATG ACAAAGGAGG GAATCGTTGT GTGCAAATAC GGAACTGGTT TGACTATCGT
AATCATATCT GTATTGTGTT TGAGAAACTT GGACCAAGCT TATACGATTT TCTTCGGAAA AACAATTATC GCTCATTTCC
CATTGATCTT GTCCGCGAGA TTGGCAGACA ACTATTGGAA TGTATAGCAT TCATGCATGA TTTGCGGATG ATTCATACTG
ACCTGAAGCC TGAAAATATA TTACTAGTTT CGCCAGAGTA TGTCAAAGTG CCTGACTACA AGAGTTCGTC TCGATCACCA
AGTACCTATT TCAAGAGAGT TCCCAAATCT AGCGCCATAA AGGTAATTGA TTTTGGCAGC ACCACTTACG AACGTGATGA
TCAGACTTAC ATTGTATCAA CTCGTCATTA TAGGGCGCCT GAAGTTATCC TTGGACTCGG CTGGAGCTAT CCATGCGATA
TATGGAGTGT AGGATGTATA TTGGTTGAGT TATGCACGGG CGAAGCATTA TTCCAGACTC ATGAAAATTT AGAACATCTT
GCTATGATGG AAAGGGTACT TGGTCCCTTA CCGCAGCACA TGTTGAAGAG AGTCGACCGA AATGCGGAGA AGTATGTTAG
GAGGGGTAGA TTAGACTGGC CTGAGGGTGC AACCTCGCGG GAGAGTATCA AAGCTGTAAT GAAGCTTCCT AGGTTACAGA
ACCTTATAAT GCAGCATGTG GATCATTCAG CAGGCGATCT CATCCATCTG TTGCAGGGAT TACTTAGATT TGATCCCTCT
GAAAGACTTA CAGCCAAGGA AGCCCTTAGA TATCCCTTCT TTATGAGAGA TCACTTCAGG AGATAATATT TAAGATATTG
TTTCATTGAC CTTCCTAAGG ATGTGTACAT TTGTGTGGTG TTTGGTTATT CTTCAGCTTT CCTCTCCTCC TTATTCAGGG
GATTTTGAAT CAATCTGAAT TCAATGTACA GAAGAAAAAA TATGTTCTAA GGTTATGGTG AAAAGTTGGA GATGTATTTG
TAC

>Vigan.01G396600.01
ATGGAGATGG AACGCGTTTT CGAATTTCCC CATTCTCATA TGGATCGGCG ACCGAGAAAG AGAGCGAGGT TGGGCTGGGA
CATTCCTGAG GTCCCTAAGG CTCAGGTAGG ATTGTTTTGT GGACAAGATG TTGGGGCTAT TTCAAGCTAT GCTCCTTCAA
GGGGTCCCTC AGAACATACC ACTTGTTCCC TATTTGTTAA GGCTGTTGCT CAAAATGGTT CTCCCCCTTG GCGAGATGAT
GACAAAGATG GACATTACAT GTTTGCGCTT GGAGATAATT TAACTTCTCG CTATAAGATC CATAGCAAAA TGGGTGAAGG
AACTTTTGGG CAGGTCTTAG AATGCTGGGA CCGAGAAAGG AAGGAAATGG TTGCGATTAA AATTGTCCGT GGGATAAAGA
AGTATCGAGA AGCAGCCATG ATAGAAATTG AGGTGCTTCA ACAGCTTGGT AAACATGACA AAGGAGGGAA TCGTTGTGTG
CAAATACGGA ACTGGTTTGA CTATCGTAAT CATATCTGTA TTGTGTTTGA GAAACTTGGA CCAAGCTTAT ACGATTTTCT
TCGGAAAAAC AATTATCGCT CATTTCCCAT TGATCTTGTC CGCGAGATTG GCAGACAACT ATTGGAATGT ATAGCATTCA
TGCATGATTT GCGGATGATT CATACTGACC TGAAGCCTGA AAATATATTA CTAGTTTCGC CAGAGTATGT CAAAGTGCCT
GACTACAAGA GTTCGTCTCG ATCACCAAGT ACCTATTTCA AGAGAGTTCC CAAATCTAGC GCCATAAAGG TAATTGATTT
TGGCAGCACC ACTTACGAAC GTGATGATCA GACTTACATT GTATCAACTC GTCATTATAG GGCGCCTGAA GTTATCCTTG
GACTCGGCTG GAGCTATCCA TGCGATATAT GGAGTGTAGG ATGTATATTG GTTGAGTTAT GCACGGGCGA AGCATTATTC
CAGACTCATG AAAATTTAGA ACATCTTGCT ATGATGGAAA GGGTACTTGG TCCCTTACCG CAGCACATGT TGAAGAGAGT
CGACCGAAAT GCGGAGAAGT ATGTTAGGAG GGGTAGATTA GACTGGCCTG AGGGTGCAAC CTCGCGGGAG AGTATCAAAG
CTGTAATGAA GCTTCCTAGG TTACAGAACC TTATAATGCA GCATGTGGAT CATTCAGCAG GCGATCTCAT CCATCTGTTG
CAGGGATTAC TTAGATTTGA TCCCTCTGAA AGACTTACAG CCAAGGAAGC CCTTAGATAT CCCTTCTTTA TGAGAGATCA
CTTCAGGAGA TAA

>Vigan.01G396600.01
MEMERVFEFP HSHMDRRPRK RARLGWDIPE VPKAQVGLFC GQDVGAISSY APSRGPSEHT TCSLFVKAVA QNGSPPWRDD
DKDGHYMFAL GDNLTSRYKI HSKMGEGTFG QVLECWDRER KEMVAIKIVR GIKKYREAAM IEIEVLQQLG KHDKGGNRCV
QIRNWFDYRN HICIVFEKLG PSLYDFLRKN NYRSFPIDLV REIGRQLLEC IAFMHDLRMI HTDLKPENIL LVSPEYVKVP
DYKSSSRSPS TYFKRVPKSS AIKVIDFGST TYERDDQTYI VSTRHYRAPE VILGLGWSYP CDIWSVGCIL VELCTGEALF
QTHENLEHLA MMERVLGPLP QHMLKRVDRN AEKYVRRGRL DWPEGATSRE SIKAVMKLPR LQNLIMQHVD HSAGDLIHLL
QGLLRFDPSE RLTAKEALRY PFFMRDHFRR *