VIGGS:GBrowse

Vigan.01G401700.01

Basic Information:

Name:	Vigan.01G401700.01 Multiple alignment Variant Information
Position:	Chr01:54015250..54016761 (+ strand)
Length:	1512

Functional Information:

Description:	Similar to heme-binding protein 1-like. [XP_004508887.1, Cicer arietinum]
InterPro:	SOUL haem-binding protein (IPR006917)
InterPro:	Regulatory factor, effector binding domain (IPR011256)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.83,0.10,3.07,1.75,1.89,4.07,22.13,1.38

Automatic updates:

Name:	NM_001250181 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max SOUL heme-binding domain-containing protein (LOC100306073), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:54015250..54015513 (+ strand)
Length:	264
Type:	five_prime_UTR

Position:	Chr01:54015514..54015716 (+ strand)
Length:	203
Type:	CDS

Position:	Chr01:54015788..54016229 (+ strand)
Length:	442
Type:	CDS

Position:	Chr01:54016230..54016761 (+ strand)
Length:	532
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G401700.01
TACAAACTGT GTAGCTGTTA CTTGTCTTTT ACTTGCCTAG TTTTTCACCC TCTCTTATCC AAACTCTCTG GCGCTGAAGA
CAAATAATTC TGATTGATAT TGAAATCTGC AATTCGGTAT ACAATCACTA GAAATCAGAA TCAGAAGAAG AATAAAACAA
TTGTCACAAA AGTCAACGGC TAAGAGCCTT GATAAAATCA CAGAAGAGGT ATATTGAGAA AAAGAGGAAG GAAATAGCAA
GAGAGAAGGG GGAAGGAAAG GAGAATGAAG AAGGGAATAA CACTACTAAC CATAACAGTG ATCGCGATAT GTTTGGCTAT
GGTTAGCAGT GCGCCGGAGT CCCCACCATA CACTGTGGTA CACTCGCAGT CCGATTTCGA GATCAGGCTC TATGGAACCT
CCGTTTGGAT GTCTGCTCCC GCTCTCGACA TTTCCTTCGA GAAAGCCTCC TGGGACGGTT TTCACAGGTT GTTCCAGTTT
ACTGAAGGCG CCAACCTCAA TTTCTCACGA ATCCCAATGA CCGTTCCCGT CTTGACCACC ACCGTTCCCG GAGCCGGTCC
CCTCAAGTCC CAAGGCTACT ACGTTAGTTT ATACTTACCC GTTAAGTTCC AAGGAAACCC ACCCCTGCCG CTTCCAGAAC
TCAATATCAG GCCCTATGAA TTCACCACCC ACTGCGTTGC GGTTAGAAAG TTCTCTGGAT TCGCCAATGA TGAGAGGATT
GTCAAGGAGG CGGAAAAGCT TGCCACCAGC CTCAGTCGCT CTCCCTGGGC GCAGTCCAAG ACTCGCCGTG GTTACTCGAT
CGCGCAGTAC AATACTCCCA TCCGAATTGT GAATCGCAAA AACGAGGTCT GGGTGGACAT TGATGCTCCT CAATTAGGCT
GTGAATCGGT TGGTATTTCC ACGTATTGAT GGAAGGGGTA TGGAAGAATG GTTCGGTACT TGTGAAGGTG TTCTTGCCTG
CTTCTTGTAC AGGTCTGTCT GATGTGTGAT ATATGTTCAT ATTGTTTAAC TGTCATGAAA CATAGACTTG TGTTGTGTCT
GTGAATAATA GGTTGCGTGA GATTTCTCAC ACGATCATGT CTATGGACAA CAGATCGACT CGCTTGCACT GTGTCAGTTA
TGTTATGATG GGATCTGTAG AAGAAAAACG TCACTTTCTT TCCTCTTTCA ACTAATCAAT TGTTAAACTC AGTGACAGTG
ATTATTGGAG GAGTGTCGGA AAAGATGAGA AGTTGGGGAA ATAGCTTATG AGCACTAATG AAAGGAAACA CTTTGTAATT
ATTAGAACAT AAAGGGACAA TCTTAGTTGA GTTTGTTTAG GAGTTTAGCT TAGAGAACAT TGGAATTTTA TAACGTTTTT
ATTTTTACAC TTTATAAACT AACTTGAATC AAGACTTTCT ATATGATTAA TTCTAGTCAT TGAAAACAAG TTAGGTTGCA
T

[show][hide][copy]CDS

>Vigan.01G401700.01
ATGAAGAAGG GAATAACACT ACTAACCATA ACAGTGATCG CGATATGTTT GGCTATGGTT AGCAGTGCGC CGGAGTCCCC
ACCATACACT GTGGTACACT CGCAGTCCGA TTTCGAGATC AGGCTCTATG GAACCTCCGT TTGGATGTCT GCTCCCGCTC
TCGACATTTC CTTCGAGAAA GCCTCCTGGG ACGGTTTTCA CAGGTTGTTC CAGTTTACTG AAGGCGCCAA CCTCAATTTC
TCACGAATCC CAATGACCGT TCCCGTCTTG ACCACCACCG TTCCCGGAGC CGGTCCCCTC AAGTCCCAAG GCTACTACGT
TAGTTTATAC TTACCCGTTA AGTTCCAAGG AAACCCACCC CTGCCGCTTC CAGAACTCAA TATCAGGCCC TATGAATTCA
CCACCCACTG CGTTGCGGTT AGAAAGTTCT CTGGATTCGC CAATGATGAG AGGATTGTCA AGGAGGCGGA AAAGCTTGCC
ACCAGCCTCA GTCGCTCTCC CTGGGCGCAG TCCAAGACTC GCCGTGGTTA CTCGATCGCG CAGTACAATA CTCCCATCCG
AATTGTGAAT CGCAAAAACG AGGTCTGGGT GGACATTGAT GCTCCTCAAT TAGGCTGTGA ATCGGTTGGT ATTTCCACGT
ATTGA

[show][hide][copy]PROTEIN

>Vigan.01G401700.01
MKKGITLLTI TVIAICLAMV SSAPESPPYT VVHSQSDFEI RLYGTSVWMS APALDISFEK ASWDGFHRLF QFTEGANLNF
SRIPMTVPVL TTTVPGAGPL KSQGYYVSLY LPVKFQGNPP LPLPELNIRP YEFTTHCVAV RKFSGFANDE RIVKEAEKLA
TSLSRSPWAQ SKTRRGYSIA QYNTPIRIVN RKNEVWVDID APQLGCESVG ISTY*