GBrowse Details

Vigan.01G405700.01

Basic Information:
Name: Vigan.01G405700.01
Multiple alignment
Variant Information
Position: Chr01:54320050..54324822 (- strand)
Length: 4773
Functional Information:
Description: Similar to 1-deoxy-D-xylulose 5-phosphate reductoisomerase. [F4ZZ26, Glycine max]
GO: Biological Process: isoprenoid biosynthetic process (GO:0008299)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: protein binding (GO:0005515)
Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604)
Molecular Function: metal ion binding (GO:0046872)
Molecular Function: NADPH binding (GO:0070402)
InterPro: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IPR003821)
1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal (IPR013512)
1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal (IPR013644)
NAD(P)-binding domain (IPR016040)
DXP reductoisomerase C-terminal domain (IPR026877)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:53.72,16.72,40.84,68.38,21.10,26.77,48.01,20.21
Arabidopsis thaliana homolog: AT5G62790.2
Automatic updates:
Name: NM_001253133 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like (DXR1), mRNA.
PubMed ID: 30786857 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:54320050..54320249 (- strand)
Length: 200
Type: three_prime_UTR
Position: Chr01:54320250..54320418 (- strand)
Length: 169
Type: CDS
Position: Chr01:54320519..54320665 (- strand)
Length: 147
Type: CDS
Position: Chr01:54321262..54321383 (- strand)
Length: 122
Type: CDS
Position: Chr01:54321538..54321642 (- strand)
Length: 105
Type: CDS
Position: Chr01:54321758..54321869 (- strand)
Length: 112
Type: CDS
Position: Chr01:54322114..54322181 (- strand)
Length: 68
Type: CDS
Position: Chr01:54322350..54322499 (- strand)
Length: 150
Type: CDS
Position: Chr01:54322638..54322700 (- strand)
Length: 63
Type: CDS
Position: Chr01:54322779..54322904 (- strand)
Length: 126
Type: CDS
Position: Chr01:54323458..54323544 (- strand)
Length: 87
Type: CDS
Position: Chr01:54323942..54324117 (- strand)
Length: 176
Type: CDS
Position: Chr01:54324435..54324525 (- strand)
Length: 91
Type: CDS
Position: Chr01:54324526..54324822 (- strand)
Length: 297
Type: five_prime_UTR


>Vigan.01G405700.01
GGCGGCGAGT GGGGATTCCA ATATACACAC ATTCCTTGGC ACTCTCTCCT AATCTTAAAA TTAAACTCTT ATTTTATTAT
CTATTTCCAC ATATAATTAA TTATAATAAA TATAATAAAT AAAAAATGCA TCTTTCATAT GTGATAATAT GTCTCAGACC
ACATCCACTG TTGTCTATTA GTACTAGTAT AAAAAAACTC AGCAATTCCA GCCACCACAC AACCTCCTTC TGCTGCCACC
ATTCTTCTTG CTCGAGATTT CAATTCTTTT TCTCCAAACT CAACTTGGGT TTATGTGATG GCGCTCAATA TCTCTTCTCC
GGCTGAAGTC AAGTCCCTTT TTTTCTCTGA TTCCTTCAAG TCTAATTGTC TCACAGCAAA ATTCCCAGGT GGTTTTGCTT
TTAAAAGAAA AGATGGTGGA AGGCGAGTTA ACTGCTCACT GCAGGCATCA CCACCACCAC CACCAGCCTG GCCGGGACGA
GCGTATCCAG AACAAGTTGG CAAGACTTGG GAGGGACCAA AACCCATATC TATTGTGGGA TCTACTGGTT CTATTGGAAC
TCAGACTCTA GATATTGTGG CAGAGAATCC AGACAAGTTT AAAGTTGTGG CACTTGCAGC TGGTTCAAAC GTTACTCTCC
TTGCAGACCA GATAAAAACA TTTAAGCCTC AACTTGTTGC TGTTAGAAAC GAGTCGCTAA TTGCTGAACT TGAAGAGGCT
TTGCATGATG TTGAACAGAA ACCTGAGATC ATCCCTGGAG AGCAGGGAAT CGTTGAGGTT GCTCGTCACC CAGATGCAGT
CAGTGTAGTC ACAGGAATAG TAGGGTGTGC AGGACTGAAG CCGACAGTTG CTGCGATAGA AGCAGGGAAA GACATAGCTT
TGGCCAACAA AGAGACGTTG ATTGCCGGAG GTCCTTTTGT CCTTCCTCTT GCTCAGAAGC ATAACGTAAA AATACTTCCT
GCTGATTCGG AACATTCTGC CATTTTTCAG TGTATCCAGG GGTTACCAGA GGGTGCACTT AGGCGCATTA TTCTAACAGC
ATCTGGAGGT GCTTTTAGGG ATTTGCCAGT TGAAAAGCTG AAAGATGTTA AAGTAGCTGA TGCATTAAAA CATCCCAACT
GGAATATGGG GAAAAAGATA ACTGTGGACT CTGCTACACT CTTTAACAAG GGTCTAGAAG TAATTGAAGC ACATTACCTA
TTTGGAGCTG ACTATGATAA TATTGAGATT GTCATTCATC CGCAATCAAT CATACATTCA ATGATTGAAA CACAGGATTC
ATCTGTTCTT GCACAACTAG GGTGGCCTGA TATGCGGTTG CCGATCCTCT ATACATTATC ATGGCCTGAC AGGGTTTATT
GTTCTGAAGT CACTTGGCCT CGCCTTGATC TTTGCAAGCT TGGTTCACTT ACATTTAAAA CTCCAGACAA TGTAAAGTAT
CCATCCATGA ATCTTGCCTA TGCTGCTGGT CGTGCTGGAG GAACAATGAC AGGAGTTCTC AGTGCAGCAA ATGAGAAAGC
TGTAGAGTTG TTTATTGATG AAAAGATTAG CTATTTGGAT ATATTCAAAG TGGTGGAGCT AACATGTGAG AAGCATCAAA
ATGAATTGTT GACCTCGCCT TCCCTTGAAG AAATTATTCA CTATGACCTA TGGGCACGAA AATACGCTGC TAGTTTGCAA
GACTCTTCCA CCTTCACACC TATTCTTGCA TGAGAAGGAT TATTAGTGTA GGGATATGGC TGATTCCTCC CACAAGGCCC
TTGAACAATT TATCCAATGC AGAATCATGC ATTCCCTTCA TGTTGAAAAA TAAAAAGGGT TATATTTATG GAATTTTTGG
TGTCTTAACA TATCTCAATT GATCTTATAA TTTTGACGTA ATTGAAAAAA ATATATTTTT TAATGGTTGC CCA

>Vigan.01G405700.01
ATGGCGCTCA ATATCTCTTC TCCGGCTGAA GTCAAGTCCC TTTTTTTCTC TGATTCCTTC AAGTCTAATT GTCTCACAGC
AAAATTCCCA GGTGGTTTTG CTTTTAAAAG AAAAGATGGT GGAAGGCGAG TTAACTGCTC ACTGCAGGCA TCACCACCAC
CACCACCAGC CTGGCCGGGA CGAGCGTATC CAGAACAAGT TGGCAAGACT TGGGAGGGAC CAAAACCCAT ATCTATTGTG
GGATCTACTG GTTCTATTGG AACTCAGACT CTAGATATTG TGGCAGAGAA TCCAGACAAG TTTAAAGTTG TGGCACTTGC
AGCTGGTTCA AACGTTACTC TCCTTGCAGA CCAGATAAAA ACATTTAAGC CTCAACTTGT TGCTGTTAGA AACGAGTCGC
TAATTGCTGA ACTTGAAGAG GCTTTGCATG ATGTTGAACA GAAACCTGAG ATCATCCCTG GAGAGCAGGG AATCGTTGAG
GTTGCTCGTC ACCCAGATGC AGTCAGTGTA GTCACAGGAA TAGTAGGGTG TGCAGGACTG AAGCCGACAG TTGCTGCGAT
AGAAGCAGGG AAAGACATAG CTTTGGCCAA CAAAGAGACG TTGATTGCCG GAGGTCCTTT TGTCCTTCCT CTTGCTCAGA
AGCATAACGT AAAAATACTT CCTGCTGATT CGGAACATTC TGCCATTTTT CAGTGTATCC AGGGGTTACC AGAGGGTGCA
CTTAGGCGCA TTATTCTAAC AGCATCTGGA GGTGCTTTTA GGGATTTGCC AGTTGAAAAG CTGAAAGATG TTAAAGTAGC
TGATGCATTA AAACATCCCA ACTGGAATAT GGGGAAAAAG ATAACTGTGG ACTCTGCTAC ACTCTTTAAC AAGGGTCTAG
AAGTAATTGA AGCACATTAC CTATTTGGAG CTGACTATGA TAATATTGAG ATTGTCATTC ATCCGCAATC AATCATACAT
TCAATGATTG AAACACAGGA TTCATCTGTT CTTGCACAAC TAGGGTGGCC TGATATGCGG TTGCCGATCC TCTATACATT
ATCATGGCCT GACAGGGTTT ATTGTTCTGA AGTCACTTGG CCTCGCCTTG ATCTTTGCAA GCTTGGTTCA CTTACATTTA
AAACTCCAGA CAATGTAAAG TATCCATCCA TGAATCTTGC CTATGCTGCT GGTCGTGCTG GAGGAACAAT GACAGGAGTT
CTCAGTGCAG CAAATGAGAA AGCTGTAGAG TTGTTTATTG ATGAAAAGAT TAGCTATTTG GATATATTCA AAGTGGTGGA
GCTAACATGT GAGAAGCATC AAAATGAATT GTTGACCTCG CCTTCCCTTG AAGAAATTAT TCACTATGAC CTATGGGCAC
GAAAATACGC TGCTAGTTTG CAAGACTCTT CCACCTTCAC ACCTATTCTT GCATGA

>Vigan.01G405700.01
MALNISSPAE VKSLFFSDSF KSNCLTAKFP GGFAFKRKDG GRRVNCSLQA SPPPPPAWPG RAYPEQVGKT WEGPKPISIV
GSTGSIGTQT LDIVAENPDK FKVVALAAGS NVTLLADQIK TFKPQLVAVR NESLIAELEE ALHDVEQKPE IIPGEQGIVE
VARHPDAVSV VTGIVGCAGL KPTVAAIEAG KDIALANKET LIAGGPFVLP LAQKHNVKIL PADSEHSAIF QCIQGLPEGA
LRRIILTASG GAFRDLPVEK LKDVKVADAL KHPNWNMGKK ITVDSATLFN KGLEVIEAHY LFGADYDNIE IVIHPQSIIH
SMIETQDSSV LAQLGWPDMR LPILYTLSWP DRVYCSEVTW PRLDLCKLGS LTFKTPDNVK YPSMNLAYAA GRAGGTMTGV
LSAANEKAVE LFIDEKISYL DIFKVVELTC EKHQNELLTS PSLEEIIHYD LWARKYAASL QDSSTFTPIL A*