GBrowse Details

Vigan.01G408300.01

Basic Information:
Name: Vigan.01G408300.01
Multiple alignment
Variant Information
Position: Chr01:54620902..54623021 (+ strand)
Length: 2120
Functional Information:
Description: Similar to basic-leucine zipper transcription factor K. [XP_008239722.1, Prunus mume]
InterPro: Protein of unknown function DUF4228, plant (IPR025322)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.67,1.96,8.44,25.52,2.00,26.94,26.93,17.87
Automatic updates:
Name: NM_001248327 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500500 (LOC100500500), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250276 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306591 (LOC100306591), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:54620902..54621276 (+ strand)
Length: 375
Type: five_prime_UTR
Position: Chr01:54621277..54621577 (+ strand)
Length: 301
Type: CDS
Position: Chr01:54621698..54621831 (+ strand)
Length: 134
Type: CDS
Position: Chr01:54622292..54622411 (+ strand)
Length: 120
Type: CDS
Position: Chr01:54622412..54623021 (+ strand)
Length: 610
Type: three_prime_UTR


>Vigan.01G408300.01
TAGGGATGGA TGTGTGAAGA GAGAGATATG ATTTTACATT ACCCTAAGAA GGTAGACCAC GAGAATGTAA CGTGATAGAG
GAGCACATCA CATCACCTAA GCTGCCAAGG TCCCCTTCTA CTTTAGTCTC TTTCCTCATC CTTCTCTTCT ATCTTTTTCT
CAAAATCTAT CTTTCTACTG CCGATTATCG TTATCATTGC TGTAAAACTT TCCAACTCTA CAAGTTAAAA GGCCTTCCCA
TTCATTTACC AACCACTATT TATAGCCCTC CTTGTGTATC ACTTTGTTTG CCCCTTTTCA AACTTGTGGC TGCTATAATT
GTTGCAGTAA GCCACCTTCC ATTCCTGTTA TCCTCTTTGT TGTTGCGTTT TAGAGATGGG AAACTGTCAA GCCGTTGACA
CTGCAACTTT AGTCATACAA CAACCCAATG GGAAAGTGGA AAGGTTGTAT TGGCCTGTGA GTGCTAGTGA AGTCATGAAG
ACCAACCCTG ATCACTATGT TGCTCTTCTT ATCTCCACCA CATTGTGCAC ATCCAAGGAC AATCAAAATT GCCAAATTAA
GATTGAAAAC AACAACCCCA ACACCACCAA CCCTGTTCGT CTCACCCGCA TCAAGCTTCT CAAGCCAACA GATACCCTTA
TGCTTGGCCA AGTTTATAGA CTAATCTCAG CTCAAGAGGT TATGAAGGGT CTTTGGGCAA AGAAACAAGC AAAGCTGAAG
AGAAACTTGC CAGAATCAGC ACAAAAGCCA AATCTGACCA AGGAAAGGAC AGACAAATCA GCAAGAAGGT CTGAGCCGGA
GGACAACCTG GAAACGAAAG GTGAAAGACA GGGGTCAAGG ACAGCATCAA GTAATAATGC TTCTGGTGCC ACAGCTAAGT
CAAGAACATG GCAACCCTCT TTACAAAGCA TCTCAGAGGC AACCAGCTGA TCTGTGTTTT CAATCTTTCC CACATGTGAT
GTGAGGGACA GAGGAGCATT GAGCGACACT CAAACCACCA AAAACAAATT AATCAATCCT TCTCCATCAT TGCTTAGATC
TGTGGAAATT AAATTAAATT AAATATAGTA CATTCGGGGA ACCCAGAGAA AACTCAGAGG TCATAAACTT CCCTTCGGTT
CACCAACTGC CTTCATGCAT AATAATTCTG TATAGTAAAG GTTGACATAT TGAACATCAA TTAATGTATT CAGATCTTAC
TTTCTGGTGA AAACACCCTT CAACATCATA ACTTCACCGT TTTTCTTACG TATTTTTTTT TTCCATATAT GGCTCATAAT
ACATCAGCAT CAGACAGATA ATTACCGAAA AAAAAGTAAT ATGTTTGTGA GCACCGTCAC ACAAGGCTTA AAGCAAATCA
TGGTTGCAAA AGAAATACTT CAAGGCTTAA GGGTAACTGC GAGAACATGA ACAGGTTCTG TGATCAGCTA TTGGCCGATC
TCTTATCTTA TTTTCTTAAT TTCAAGAAAA GAACAAGTTG GCCACCAGAA TGTTACAAAA TACTTAAGAG CAATGTTTAA
AGTACTACAT ATCATTCACA 

>Vigan.01G408300.01
ATGGGAAACT GTCAAGCCGT TGACACTGCA ACTTTAGTCA TACAACAACC CAATGGGAAA GTGGAAAGGT TGTATTGGCC
TGTGAGTGCT AGTGAAGTCA TGAAGACCAA CCCTGATCAC TATGTTGCTC TTCTTATCTC CACCACATTG TGCACATCCA
AGGACAATCA AAATTGCCAA ATTAAGATTG AAAACAACAA CCCCAACACC ACCAACCCTG TTCGTCTCAC CCGCATCAAG
CTTCTCAAGC CAACAGATAC CCTTATGCTT GGCCAAGTTT ATAGACTAAT CTCAGCTCAA GAGGTTATGA AGGGTCTTTG
GGCAAAGAAA CAAGCAAAGC TGAAGAGAAA CTTGCCAGAA TCAGCACAAA AGCCAAATCT GACCAAGGAA AGGACAGACA
AATCAGCAAG AAGGTCTGAG CCGGAGGACA ACCTGGAAAC GAAAGGTGAA AGACAGGGGT CAAGGACAGC ATCAAGTAAT
AATGCTTCTG GTGCCACAGC TAAGTCAAGA ACATGGCAAC CCTCTTTACA AAGCATCTCA GAGGCAACCA GCTGA

>Vigan.01G408300.01
MGNCQAVDTA TLVIQQPNGK VERLYWPVSA SEVMKTNPDH YVALLISTTL CTSKDNQNCQ IKIENNNPNT TNPVRLTRIK
LLKPTDTLML GQVYRLISAQ EVMKGLWAKK QAKLKRNLPE SAQKPNLTKE RTDKSARRSE PEDNLETKGE RQGSRTASSN
NASGATAKSR TWQPSLQSIS EATS*