GBrowse Details

Vigan.01G409500.01

Basic Information:
Name: Vigan.01G409500.01
Multiple alignment
Variant Information
Position: Chr01:54722953..54728669 (+ strand)
Length: 5717
Functional Information:
Description: Similar to Peroxisomal betaine-aldehyde dehydrogenase. [B0M1A5, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
InterPro: Aldehyde dehydrogenase domain (IPR015590)
Aldehyde dehydrogenase, conserved site (IPR016160)
Aldehyde/histidinol dehydrogenase (IPR016161)
Aldehyde dehydrogenase, N-terminal (IPR016162)
Aldehyde dehydrogenase, C-terminal (IPR016163)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:166.97,97.69,67.88,54.36,65.13,61.01,34.80,38.02
Arabidopsis thaliana homolog: AT1G74920.1, AT3G48170.1
Automatic updates:
Name: NM_001251498 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max betaine aldehyde dehydrogenase (ALDH10A1), mRNA.
PubMed ID: 28687067 NCBI(pubmed)
21046066 NCBI(pubmed)
18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:54722953..54723135 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr01:54723136..54723244 (+ strand)
Length: 109
Type: CDS
Position: Chr01:54723321..54723463 (+ strand)
Length: 143
Type: CDS
Position: Chr01:54723535..54723615 (+ strand)
Length: 81
Type: CDS
Position: Chr01:54723705..54723853 (+ strand)
Length: 149
Type: CDS
Position: Chr01:54723941..54724033 (+ strand)
Length: 93
Type: CDS
Position: Chr01:54724117..54724240 (+ strand)
Length: 124
Type: CDS
Position: Chr01:54724391..54724456 (+ strand)
Length: 66
Type: CDS
Position: Chr01:54724964..54725030 (+ strand)
Length: 67
Type: CDS
Position: Chr01:54725192..54725268 (+ strand)
Length: 77
Type: CDS
Position: Chr01:54725485..54725598 (+ strand)
Length: 114
Type: CDS
Position: Chr01:54726111..54726188 (+ strand)
Length: 78
Type: CDS
Position: Chr01:54726277..54726428 (+ strand)
Length: 152
Type: CDS
Position: Chr01:54726530..54726590 (+ strand)
Length: 61
Type: CDS
Position: Chr01:54726677..54726783 (+ strand)
Length: 107
Type: CDS
Position: Chr01:54728095..54728185 (+ strand)
Length: 91
Type: CDS
Position: Chr01:54728186..54728669 (+ strand)
Length: 484
Type: three_prime_UTR


>Vigan.01G409500.01
TGGACTAACT CTAAACTTCA ACACAAAATC TGATGTAGAA ATGGAGAAAA TAGAGGAGTA AGAGAAGTAA AGATAAGAAC
AGAAAAAGCT GTGGAAAGTT CGTCAGTTTA CTAACTCCAT TGAGCTCGGT CACTCACATT TCCAATTACG CTAAAATTTG
TGCAGACAGA GACACGCAAC AAGATGTCCA TCGCAATTCC CAACCGTCAA TTGTTCATAG ACGGTGACTG GAAAGTCCCT
GCCCTCGGCA AACGGATTCC CATCATCAAC CCTTCCACAC AACAGATCAT CGGGGATATC CCAGCCGCTA CTAAGGAAGA
TGTCGACGCC GCCGTCGCCG CCGCCAAAGC CGCCCTTTCC CGCAACAAAG GCGCCGATTG GGCCTCCGCT TCCGGCGCTG
TTCGGGCCCG CTATCTCCGT GCCATCGCTG TCAAGGTCAC CGAGAAAAAA CCCGAGCTCG CAAAACTAGA AGCCATCGAT
TGTGGAAAAC CGCTGGATGA AGCTGCCTGG GACATCGACG ATGTTGCTGG TTGCTTTGAG TTCTACGCTG ATCTGGCTGA
AAAATTGGAC TCCAAGCAAA AGGCTCCGGT GTCTCTTCCC ATGGACACAT TCAAGAGTTA CGTTCTTAAG GAGCCAATTG
GGGTTGTAGG ATTAATAACT CCCTGGAATT ATCCTATGTT GATGGCTACG TGGAAGGTTG CTCCTGCTCT GGCAGCGGGT
TGTGCTGCAA TATTGAAGCC CTCTGAGTTG GCATCTGTGA CCTGCTTGGA GCTAGGTGAG ATTTGCAAAG AAGTGGGGCT
TCCTCCTGGT GTGTTGAACA TTCTCACTGG ATTAGGACCT GAAGCTGGTG CTCCATTAGC AGTCCATCCT GATGTCGACA
AGATTGCCTT TACTGGAAGC TCTGCAACGG GGAGCAAGAT TATGACGGCC GCAGCCCAGC TGGTCAAGCC TGTTTCACTA
GAGCTTGGTG GAAAAAGTCC AATCGTTGTC TTTGAGGATG TTGACCTTGA CAAGGCTGCT GAATGGACCA TCTTTGGCTG
CTTCTGGACA AATGGTCAGA TATGCAGTGC AACTTCCCGC CTTATTGTAC ATGAAAGTAT AGCAACAGAG TTTTTGAATA
GGATTGTGAA ATGGATAAAA AACATCAAAA TTTCTGATCC CTTGGAAGAA GGTTGCAGAC TGGGCCCTGT TGTTAGTGAG
GGACAGTATG AAAAAGTATT GAAGTTTATC TCAAATGCTA AGAGTGAGGG TGCAACCATT TTGACTGGTG GGTCTCGCCC
TGAGCATCTA AACAAAGGAT TCTTCGTTGA ACCGACTGTC ATAACTGATG TGACTACCTC TATGCAAATT TGGAGAGAAG
AAGTATTTGG ACCTGTTCTC TGTGTAAAAA CATTTAGCAC TGAGGAAGAA GCTATTGATC TAGCAAATGA TACTGTATAT
GGCTTAGGTT CTGCTGTAAT ATCAAATGAT TTAGAAAGAT GTGAGCGCAT TACTAAGGCT TTTAAGGCTG GAATTGTGTG
GATTAATTGC TCTCAACCAT GCTTCACTCA AGCCCCATGG GGAGGCGTTA AACGCAGCGG CTTTGGTCGT GAATTAGGAG
AATGGGGACT TGATAATTAC TTAAGTGTGA AGCAAGTGAC TAAGTACATC TCTGATGAAC CGTGGGGCTG GTACCACTCT
CCTTCAAAGA TGTGACACTT ATCTAACAGC TGAGATGTAA TAAGGTGTGG GTAAACACCA AATTACGGTA GGATCTCAAT
GTTGAGAAGA CATTATGTCA ATGTATAACA ACATAACTGG TTTCTAGATT TATGATGGTA GTGGTTCTAA TTTCATTTGG
TTATGTTGGC CCATCATCAT GCATCTAATT TCTAATCTCG TGGCAGATTT CTCTGAACTC TAGTTCACCC GGACTGAAGT
ATCATTCCTA CTTTTTTCAT GACGGGGTGG ATAGTGCAAT CATATTCAAG GTGGTGACAT TTCTTAAGTA AAGCTTGAAA
GTAATAATAG TTGCATTTAT AGAAAAATAA AGAAAAACTA CTACCATCAT GGAGGTTGTT GACAATATTA TAAATGTTTG
TTTGGTTTAG AGAATGGTTT TAATGTGAAA TTAATATCTT GAACAATTTT ATTGTTGAAG CTATTTTTGA ACAATTTGTG
CAATTAAGCC TTAATTTTT

>Vigan.01G409500.01
ATGTCCATCG CAATTCCCAA CCGTCAATTG TTCATAGACG GTGACTGGAA AGTCCCTGCC CTCGGCAAAC GGATTCCCAT
CATCAACCCT TCCACACAAC AGATCATCGG GGATATCCCA GCCGCTACTA AGGAAGATGT CGACGCCGCC GTCGCCGCCG
CCAAAGCCGC CCTTTCCCGC AACAAAGGCG CCGATTGGGC CTCCGCTTCC GGCGCTGTTC GGGCCCGCTA TCTCCGTGCC
ATCGCTGTCA AGGTCACCGA GAAAAAACCC GAGCTCGCAA AACTAGAAGC CATCGATTGT GGAAAACCGC TGGATGAAGC
TGCCTGGGAC ATCGACGATG TTGCTGGTTG CTTTGAGTTC TACGCTGATC TGGCTGAAAA ATTGGACTCC AAGCAAAAGG
CTCCGGTGTC TCTTCCCATG GACACATTCA AGAGTTACGT TCTTAAGGAG CCAATTGGGG TTGTAGGATT AATAACTCCC
TGGAATTATC CTATGTTGAT GGCTACGTGG AAGGTTGCTC CTGCTCTGGC AGCGGGTTGT GCTGCAATAT TGAAGCCCTC
TGAGTTGGCA TCTGTGACCT GCTTGGAGCT AGGTGAGATT TGCAAAGAAG TGGGGCTTCC TCCTGGTGTG TTGAACATTC
TCACTGGATT AGGACCTGAA GCTGGTGCTC CATTAGCAGT CCATCCTGAT GTCGACAAGA TTGCCTTTAC TGGAAGCTCT
GCAACGGGGA GCAAGATTAT GACGGCCGCA GCCCAGCTGG TCAAGCCTGT TTCACTAGAG CTTGGTGGAA AAAGTCCAAT
CGTTGTCTTT GAGGATGTTG ACCTTGACAA GGCTGCTGAA TGGACCATCT TTGGCTGCTT CTGGACAAAT GGTCAGATAT
GCAGTGCAAC TTCCCGCCTT ATTGTACATG AAAGTATAGC AACAGAGTTT TTGAATAGGA TTGTGAAATG GATAAAAAAC
ATCAAAATTT CTGATCCCTT GGAAGAAGGT TGCAGACTGG GCCCTGTTGT TAGTGAGGGA CAGTATGAAA AAGTATTGAA
GTTTATCTCA AATGCTAAGA GTGAGGGTGC AACCATTTTG ACTGGTGGGT CTCGCCCTGA GCATCTAAAC AAAGGATTCT
TCGTTGAACC GACTGTCATA ACTGATGTGA CTACCTCTAT GCAAATTTGG AGAGAAGAAG TATTTGGACC TGTTCTCTGT
GTAAAAACAT TTAGCACTGA GGAAGAAGCT ATTGATCTAG CAAATGATAC TGTATATGGC TTAGGTTCTG CTGTAATATC
AAATGATTTA GAAAGATGTG AGCGCATTAC TAAGGCTTTT AAGGCTGGAA TTGTGTGGAT TAATTGCTCT CAACCATGCT
TCACTCAAGC CCCATGGGGA GGCGTTAAAC GCAGCGGCTT TGGTCGTGAA TTAGGAGAAT GGGGACTTGA TAATTACTTA
AGTGTGAAGC AAGTGACTAA GTACATCTCT GATGAACCGT GGGGCTGGTA CCACTCTCCT TCAAAGATGT GA

>Vigan.01G409500.01
MSIAIPNRQL FIDGDWKVPA LGKRIPIINP STQQIIGDIP AATKEDVDAA VAAAKAALSR NKGADWASAS GAVRARYLRA
IAVKVTEKKP ELAKLEAIDC GKPLDEAAWD IDDVAGCFEF YADLAEKLDS KQKAPVSLPM DTFKSYVLKE PIGVVGLITP
WNYPMLMATW KVAPALAAGC AAILKPSELA SVTCLELGEI CKEVGLPPGV LNILTGLGPE AGAPLAVHPD VDKIAFTGSS
ATGSKIMTAA AQLVKPVSLE LGGKSPIVVF EDVDLDKAAE WTIFGCFWTN GQICSATSRL IVHESIATEF LNRIVKWIKN
IKISDPLEEG CRLGPVVSEG QYEKVLKFIS NAKSEGATIL TGGSRPEHLN KGFFVEPTVI TDVTTSMQIW REEVFGPVLC
VKTFSTEEEA IDLANDTVYG LGSAVISNDL ERCERITKAF KAGIVWINCS QPCFTQAPWG GVKRSGFGRE LGEWGLDNYL
SVKQVTKYIS DEPWGWYHSP SKM*