GBrowse Details

Vigan.01G409900.01

Basic Information:
Name: Vigan.01G409900.01
Multiple alignment
Variant Information
Position: Chr01:54758221..54760293 (+ strand)
Length: 2073
Functional Information:
Description: Similar to Uncharacterized protein. [I1MTM0, Glycine max]
GO: Biological Process: phosphorelay signal transduction system (GO:0000160)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: phosphorelay response regulator activity (GO:0000156)
InterPro: Signal transduction response regulator, receiver domain (IPR001789)
CheY-like superfamily (IPR011006)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.11,13.41,7.60,3.13,6.34,6.13,14.62,17.42
Arabidopsis thaliana homolog: AT3G48100.1
Automatic updates:
Name: NM_001250268 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527518 (LOC100527518), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:54758221..54758337 (+ strand)
Length: 117
Type: five_prime_UTR
Position: Chr01:54758338..54758491 (+ strand)
Length: 154
Type: CDS
Position: Chr01:54758586..54758662 (+ strand)
Length: 77
Type: CDS
Position: Chr01:54758766..54758843 (+ strand)
Length: 78
Type: CDS
Position: Chr01:54758998..54759071 (+ strand)
Length: 74
Type: CDS
Position: Chr01:54759832..54760072 (+ strand)
Length: 241
Type: CDS
Position: Chr01:54760073..54760293 (+ strand)
Length: 221
Type: three_prime_UTR


>Vigan.01G409900.01
TTTATATTCA TCACTCTCTC TCCCTTTCCC TTGTAACAAT ATATAAACAA AATCCACCCA TTTTTCTCTC TACTTTCTTT
TCTCGCACTA CCCACCTCCG TTAAACTTTT CACTTTCATG GCCATCACCG GTGAGATTTT CCGGCAAAAC TTAACGGAAT
TGCTCGAGGA GTCTCCTTCT GGTTCGCCAG AGCTTCACGT TCTTGCCGTC GATGACAGCC TCGTTGATCG CCATGTCATC
GAACGCTTGC TCAAGGTTTC TTCCTGCAAA GTGACGGTTG TGGAGAGTGG AACGCGTGCT CTTCAGTATC TGGGCTTGGA
CGGAGAGACC GGTTCTCTCG GCTTGGATAG TGCGAAGGTT AATCTCATAA TGACGGATTA CTCCATGCCG GGGATGACAG
GATACGAATT ACTCAAGAAA ATCAAGCAGG AGTCTTCCGT GTTTAGAGAG ATTCCAGTGG TGATCATGTC GTCGGAGAAT
GTTTTGACTC GAATTGATAG GTGTCTGGAG GAAGGAGCAG AGGAGTTTCT GTTGAAGCCT GTAAAATTGT CAGATGTAAG
ACGCTTGAAA GATTTCATCA TGAAAGGGAA AGTGAAGGAT GTTGAAAAAA AATCTCTCAA AAGAATGAGG TCAATTGATT
GCAGTCCACC GCTGTCTGCA ACATACTCAG CCATCTCTCT TCCATGCGAT CCGTCACCAT CATTGCTCTC ACCATTATCC
TCAAAGAAGG CTAGATTGTG ATGTGCTCAC AGATTCACTA CTGCCTGTCT CCAATTTTGT CGACACCAGG TGTTAATATC
AAAAGTTTGT GGTGTGTTTT GCATTTGTTC AGAAAAGCAA ATGTCAGAAT CGCTAATTGT TTTTGCCTCT TGTTTTTCAT
TTGATCTTGC TCATGTACAG TGGAAAATCA TCATTATATA CCAAAATAGA GAGCTATTCT GCAACATTTT CTTACCCAAA
TA

>Vigan.01G409900.01
ATGGCCATCA CCGGTGAGAT TTTCCGGCAA AACTTAACGG AATTGCTCGA GGAGTCTCCT TCTGGTTCGC CAGAGCTTCA
CGTTCTTGCC GTCGATGACA GCCTCGTTGA TCGCCATGTC ATCGAACGCT TGCTCAAGGT TTCTTCCTGC AAAGTGACGG
TTGTGGAGAG TGGAACGCGT GCTCTTCAGT ATCTGGGCTT GGACGGAGAG ACCGGTTCTC TCGGCTTGGA TAGTGCGAAG
GTTAATCTCA TAATGACGGA TTACTCCATG CCGGGGATGA CAGGATACGA ATTACTCAAG AAAATCAAGC AGGAGTCTTC
CGTGTTTAGA GAGATTCCAG TGGTGATCAT GTCGTCGGAG AATGTTTTGA CTCGAATTGA TAGGTGTCTG GAGGAAGGAG
CAGAGGAGTT TCTGTTGAAG CCTGTAAAAT TGTCAGATGT AAGACGCTTG AAAGATTTCA TCATGAAAGG GAAAGTGAAG
GATGTTGAAA AAAAATCTCT CAAAAGAATG AGGTCAATTG ATTGCAGTCC ACCGCTGTCT GCAACATACT CAGCCATCTC
TCTTCCATGC GATCCGTCAC CATCATTGCT CTCACCATTA TCCTCAAAGA AGGCTAGATT GTGA

>Vigan.01G409900.01
MAITGEIFRQ NLTELLEESP SGSPELHVLA VDDSLVDRHV IERLLKVSSC KVTVVESGTR ALQYLGLDGE TGSLGLDSAK
VNLIMTDYSM PGMTGYELLK KIKQESSVFR EIPVVIMSSE NVLTRIDRCL EEGAEEFLLK PVKLSDVRRL KDFIMKGKVK
DVEKKSLKRM RSIDCSPPLS ATYSAISLPC DPSPSLLSPL SSKKARL*