GBrowse Details

Vigan.01G410900.01

Basic Information:
Name: Vigan.01G410900.01
Multiple alignment
Variant Information
Position: Chr01:54827797..54829511 (+ strand)
Length: 1715
Functional Information:
Description: Similar to ribonuclease H2 subunit C-like. [XP_004507766.1, Cicer arietinum]
InterPro: Ribonuclease H2, subunit C (IPR013924)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.08,0.22,3.64,1.09,3.43,1.63,1.44,0.85
Arabidopsis thaliana homolog: AT2G39440.1
Automatic updates:
Name: NM_001248540 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500515 (LOC100500515), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:54827797..54827838 (+ strand)
Length: 42
Type: five_prime_UTR
Position: Chr01:54827839..54828175 (+ strand)
Length: 337
Type: CDS
Position: Chr01:54828297..54828463 (+ strand)
Length: 167
Type: CDS
Position: Chr01:54829294..54829347 (+ strand)
Length: 54
Type: CDS
Position: Chr01:54829348..54829511 (+ strand)
Length: 164
Type: three_prime_UTR


>Vigan.01G410900.01
CTGTTTGGTT TGGGAGGAAA TAAAAGCAGA GGGAAGGAAA TAATGTTAAT TAAGAATTGG GGTTTGATTT TAGCGGCAAA
ACCAAAATAC GCGCCTCCAG TGTCGTACCT CCCTCGACAG AACCCAACGG TGTGGATTGG AAGAGCAAAG GCCGAAATGG
AAAACGCCAC CGTAGATCTC AAGCCACATG GAGAAGATTT GAGCGGCTGC GTTCATCAAC TCCCCTGCTG CGTCAAGCAC
GACGGTCCCG CCTCCGTTTC CCACTACTTC AAACCTAAAT ACAACGGCGT CTCTGACGAA GGTTTGCCAT TACAGGAAGC
GCATTTCAGA GGAAGGCTAC TCCAGGGAAC CACTCTCCAA CTTCCTCACG GTTACTCTGG TTTTGTTCTG GCTAAGAAAA
CATCGCCTCC GTCGTCTAAA CAATACTCGA ATTCTTGGGT CACCAAAGCA ACGTTTCAGG ACATTACCTA TTGGAACCAT
GACTACGTTC CTTCCCATAA CGATGAAATG CTCCGAGCTT TTCATTGGCT TACTGTTGCA AAAGCTCTGC ACGATCCTGT
GACACCGGAG GAATTAGCTT CGTCATCTTT TGCACTCTAG AGATGGACTG CATTGCTTAT GAAATGCTGT ATCTGTCAAA
TTTACTCTTA ATTTATAGCT GTAATATTTA TGTTTTAGTT GTACATTTTC GTTGTCTCCA ACAATCGCAA TCTACTGTAT
TACTTCCCCT TTGACAGAAA AATATCCATT TTTCTCTATG TTAA

>Vigan.01G410900.01
ATGTTAATTA AGAATTGGGG TTTGATTTTA GCGGCAAAAC CAAAATACGC GCCTCCAGTG TCGTACCTCC CTCGACAGAA
CCCAACGGTG TGGATTGGAA GAGCAAAGGC CGAAATGGAA AACGCCACCG TAGATCTCAA GCCACATGGA GAAGATTTGA
GCGGCTGCGT TCATCAACTC CCCTGCTGCG TCAAGCACGA CGGTCCCGCC TCCGTTTCCC ACTACTTCAA ACCTAAATAC
AACGGCGTCT CTGACGAAGG TTTGCCATTA CAGGAAGCGC ATTTCAGAGG AAGGCTACTC CAGGGAACCA CTCTCCAACT
TCCTCACGGT TACTCTGGTT TTGTTCTGGC TAAGAAAACA TCGCCTCCGT CGTCTAAACA ATACTCGAAT TCTTGGGTCA
CCAAAGCAAC GTTTCAGGAC ATTACCTATT GGAACCATGA CTACGTTCCT TCCCATAACG ATGAAATGCT CCGAGCTTTT
CATTGGCTTA CTGTTGCAAA AGCTCTGCAC GATCCTGTGA CACCGGAGGA ATTAGCTTCG TCATCTTTTG CACTCTAG

>Vigan.01G410900.01
MLIKNWGLIL AAKPKYAPPV SYLPRQNPTV WIGRAKAEME NATVDLKPHG EDLSGCVHQL PCCVKHDGPA SVSHYFKPKY
NGVSDEGLPL QEAHFRGRLL QGTTLQLPHG YSGFVLAKKT SPPSSKQYSN SWVTKATFQD ITYWNHDYVP SHNDEMLRAF
HWLTVAKALH DPVTPEELAS SSFAL*