GBrowse Details

Vigan.01G411100.01

Basic Information:
Name: Vigan.01G411100.01
Multiple alignment
Variant Information
Position: Chr01:54831194..54834340 (+ strand)
Length: 3147
Functional Information:
Description: Similar to 50S ribosomal protein L35. [I1JGS8, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L35, non-mitochondrial (IPR001706)
Ribosomal protein L35, conserved site (IPR018265)
Ribosomal protein L35 (IPR021137)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.88,21.11,40.09,182.50,17.07,70.17,32.67,30.31
Arabidopsis thaliana homolog: AT2G24090.1
Structure :
Position: Chr01:54831194..54831365 (+ strand)
Length: 172
Type: five_prime_UTR
Position: Chr01:54831366..54831614 (+ strand)
Length: 249
Type: CDS
Position: Chr01:54831696..54831812 (+ strand)
Length: 117
Type: CDS
Position: Chr01:54833898..54833975 (+ strand)
Length: 78
Type: CDS
Position: Chr01:54833976..54834340 (+ strand)
Length: 365
Type: three_prime_UTR


>Vigan.01G411100.01
GTAAAAAAGC AAACTTAAAA AATGAAAAGA AATTGTGATG AGGTGAATGT GAGGGAGAAA AATTAGAGGA CAAGAGCTAG
CTCTCTCTGG CTGCATAGGC AGTTAGCACC TCAGCTTTAT CCATAGACCA GAAGTTTGGG TTAAACGAAG CTGAGCTCAC
CTCACACTGA AGATGGCTAC CGTGTCGTTG GGCTTGGGAA TTTTACCTTG CGCTTCTTCT TCTTATTCAA TTCGTCTCTC
TTACACTTCA GTTCGATTCC CTACATCCAA CAACGCAAAC TCCCTCAACC TTAGTTCTTC AGCTTCCATC TCCGCCCCAC
TTCTTCGTCA AAAGCTCTGC ACAACTCCTT CTCCTCTCCC TCCAACCCTT CGCCCTCTCA CCATTGTATC CGCTAAGGGC
TACAAAATGA AAACCCACAA GGCATCGGCA AAGCGGTTTA GGGTCACGGG GCGAGGCAAA ATTGTTCGTA GGAGAGCTGG
CAAGCAGCAT TTGCTTGTCA AGAAGAACAC CAAGCGCAAA TTACGACTCT CCAAAATGCA TCCGGTCAGC AGGAGCGACT
ATGACAACGT AATTGGAGCC TTGCCATATC TGAAAGTAAA CAGAAATGCT AAATAGATGT CGTGTTTGCA AAACTGAGTC
AAAAGCCTAG CTGTGTTTAG TTGTGAATGG TGACGCCTCT AATCTGCTTT CAAATGAATA CAGTTTGTTT TGGCTAATTG
AGACATCGGT ATCTTAAGAA TGTGATTTAC CTTTCTGTGT CATGTAACAT GGGTATTTAT TGACATCCCA GTATTGCTAT
TTATTTCCCA TCTTCCTGTT TATCTCTGGA TTTGTTTGGT AAGCTATGAT AAAAATCACG TGAGCATCAT AATCTATTTG
GTGAGTTATG TAGAATGAGG AATATTAACA AAATACTCTA CAATACTTTC TTCTCATATT ACTATTTACT GTTACGTGAT
ATACTTATGT GGAATCTATC A

>Vigan.01G411100.01
ATGGCTACCG TGTCGTTGGG CTTGGGAATT TTACCTTGCG CTTCTTCTTC TTATTCAATT CGTCTCTCTT ACACTTCAGT
TCGATTCCCT ACATCCAACA ACGCAAACTC CCTCAACCTT AGTTCTTCAG CTTCCATCTC CGCCCCACTT CTTCGTCAAA
AGCTCTGCAC AACTCCTTCT CCTCTCCCTC CAACCCTTCG CCCTCTCACC ATTGTATCCG CTAAGGGCTA CAAAATGAAA
ACCCACAAGG CATCGGCAAA GCGGTTTAGG GTCACGGGGC GAGGCAAAAT TGTTCGTAGG AGAGCTGGCA AGCAGCATTT
GCTTGTCAAG AAGAACACCA AGCGCAAATT ACGACTCTCC AAAATGCATC CGGTCAGCAG GAGCGACTAT GACAACGTAA
TTGGAGCCTT GCCATATCTG AAAGTAAACA GAAATGCTAA ATAG

>Vigan.01G411100.01
MATVSLGLGI LPCASSSYSI RLSYTSVRFP TSNNANSLNL SSSASISAPL LRQKLCTTPS PLPPTLRPLT IVSAKGYKMK
THKASAKRFR VTGRGKIVRR RAGKQHLLVK KNTKRKLRLS KMHPVSRSDY DNVIGALPYL KVNRNAK*