GBrowse Details

Vigan.01G411900.01

Basic Information:
Name: Vigan.01G411900.01
Multiple alignment
Variant Information
Position: Chr01:54925677..54928557 (- strand)
Length: 2881
Functional Information:
Description: Similar to calcineurin subunit B-like. [XP_004507759.1, Cicer arietinum]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: EF-hand domain (IPR002048)
EF-hand domain pair (IPR011992)
EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.26,0.21,15.75,10.62,18.65,11.88,20.04,6.26
Automatic updates:
Name: NM_001248991 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calcium-binding EF-hand family protein (LOC100305475), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:54925677..54925901 (- strand)
Length: 225
Type: three_prime_UTR
Position: Chr01:54925902..54925952 (- strand)
Length: 51
Type: CDS
Position: Chr01:54926595..54926669 (- strand)
Length: 75
Type: CDS
Position: Chr01:54927734..54927843 (- strand)
Length: 110
Type: CDS
Position: Chr01:54927943..54928039 (- strand)
Length: 97
Type: CDS
Position: Chr01:54928108..54928232 (- strand)
Length: 125
Type: CDS
Position: Chr01:54928324..54928393 (- strand)
Length: 70
Type: CDS
Position: Chr01:54928394..54928557 (- strand)
Length: 164
Type: five_prime_UTR


>Vigan.01G411900.01
AAAATGTTGA ACGTGGAGGT GTTAGGCTTC CACATGGCGA AAATAGACCT TTTCAATTCA TGGATGCGTA GCCGAAGAAA
GTAGTTGGGG GCAGTTGGGA TGCAGTGTTC ATTTCTTCTC TCTTTCTCTC TCACACACAG ACACACACTT TCTCGCCAGA
AGCCATGGGC AACACATCTT CCATGCTCAC CCAATACGAC ATCGAAGAGG TTCAGCAACA CTGCCAACAC GCTTTTACGC
AGCAGGAGAT TGTTTCTCTG TACCAACGCT TCTGTCAACT CGATCGCAAC AACTGCGGTT TCATCTCTTC TGATGAATTC
CTCTCCATTC CCGAATTCGC CGTCAATCCT CTCTCTCAGA GTTTGTTGAG GATGCTGGAC GGATTGAACT TCAAGGAATT
CGTGGCTTTC TTATCTGCCT TCAGTCCCCG CGCCACTCTA CACCAAAAAA TTCTATTCAT TTTCAAGTGG TATGATACCG
ATTGCAATGG AAAAGTGACC TTCCATGACA TGCTCAGGGC TTTAAGGGAT TTGTCAGGAT CCTTCATGTC TGAGCAACAG
AGAGAGGAAG TTCTGACACA GGTCCTTGAG GAAGCTGGCT ATGCAAAGGA TTCTTCATTA GTCTTGTCTG ACTTCGTGAA
GATTCTTGGC AATTCGGGTT TGAAGATGGA AGTAGAGATT CCGGTGGATT AGAGAGAGGA TAGCACTATT GCCTTGTATA
ATATAAAAAA AAAAAAAATT AGCTATCATG AGTACTCTAT GAGTTTGATA TGGGAGCTTA TTGGTTTTGG TATTTTGATC
TTTATTGTAA TGGGTAATAG ATTATTTATT GAGTGTTTAA TTACTCTGAA GCAAAATTAT AGATGATACA ATTTTTAACA
AATGCTCTCA GGAAGCAGAA TTGAATTTCT GCATGAA

>Vigan.01G411900.01
ATGGGCAACA CATCTTCCAT GCTCACCCAA TACGACATCG AAGAGGTTCA GCAACACTGC CAACACGCTT TTACGCAGCA
GGAGATTGTT TCTCTGTACC AACGCTTCTG TCAACTCGAT CGCAACAACT GCGGTTTCAT CTCTTCTGAT GAATTCCTCT
CCATTCCCGA ATTCGCCGTC AATCCTCTCT CTCAGAGTTT GTTGAGGATG CTGGACGGAT TGAACTTCAA GGAATTCGTG
GCTTTCTTAT CTGCCTTCAG TCCCCGCGCC ACTCTACACC AAAAAATTCT ATTCATTTTC AAGTGGTATG ATACCGATTG
CAATGGAAAA GTGACCTTCC ATGACATGCT CAGGGCTTTA AGGGATTTGT CAGGATCCTT CATGTCTGAG CAACAGAGAG
AGGAAGTTCT GACACAGGTC CTTGAGGAAG CTGGCTATGC AAAGGATTCT TCATTAGTCT TGTCTGACTT CGTGAAGATT
CTTGGCAATT CGGGTTTGAA GATGGAAGTA GAGATTCCGG TGGATTAG

>Vigan.01G411900.01
MGNTSSMLTQ YDIEEVQQHC QHAFTQQEIV SLYQRFCQLD RNNCGFISSD EFLSIPEFAV NPLSQSLLRM LDGLNFKEFV
AFLSAFSPRA TLHQKILFIF KWYDTDCNGK VTFHDMLRAL RDLSGSFMSE QQREEVLTQV LEEAGYAKDS SLVLSDFVKI
LGNSGLKMEV EIPVD*