GBrowse Details

Vigan.01G412600.01

Basic Information:
Name: Vigan.01G412600.01
Multiple alignment
Variant Information
Position: Chr01:54961497..54967292 (- strand)
Length: 5796
Functional Information:
Description: Similar to Translation initiation factor IF-3. [V7CBY3, Phaseolus vulgaris]
GO: Biological Process: translational initiation (GO:0006413)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation initiation factor 3 (IPR001288)
Translation initiation factor 3, conserved site (IPR019813)
Translation initiation factor 3, N-terminal (IPR019814)
Translation initiation factor 3, C-terminal (IPR019815)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:47.09,20.90,16.98,63.26,8.09,10.75,7.02,9.14
Arabidopsis thaliana homolog: AT4G30690.1
Automatic updates:
Name: NM_001414643 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max translation initiation factor IF-3-like (LOC100780734), transcript variant 2, mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:54961497..54962141 (- strand)
Length: 645
Type: three_prime_UTR
Position: Chr01:54962142..54962291 (- strand)
Length: 150
Type: CDS
Position: Chr01:54962623..54962715 (- strand)
Length: 93
Type: CDS
Position: Chr01:54962806..54962878 (- strand)
Length: 73
Type: CDS
Position: Chr01:54965019..54965052 (- strand)
Length: 34
Type: CDS
Position: Chr01:54965137..54965192 (- strand)
Length: 56
Type: CDS
Position: Chr01:54965774..54965826 (- strand)
Length: 53
Type: CDS
Position: Chr01:54966462..54966521 (- strand)
Length: 60
Type: CDS
Position: Chr01:54966717..54966756 (- strand)
Length: 40
Type: CDS
Position: Chr01:54966843..54967117 (- strand)
Length: 275
Type: CDS
Position: Chr01:54967118..54967292 (- strand)
Length: 175
Type: five_prime_UTR


>Vigan.01G412600.01
ATGAAAAAAA ATGGTTAATT ATTAATATTA TTATGCTTAA ATGTTTAAGT TATGTAGTAG TATTTTTGCG ATGTTGGAGT
TTGAAAGGAG CGAGTGGAGC TAATAGGTGA CTCAGAGTTT AGGATAAGAG ATATGCGCCA TAGTTGAAGA TTGAATAAGG
AAGGGTCCGC GTGCCATGGC TGGCATCACC ACCGTCCCCT TCAAACTCTT TCATTACCAC GCCACACCTT CTCCTCTCTT
CACTTCTTCT CATTCCAAAC TCTTCGGCCT TTCCCTCTCT AATCCCAATT CCCTCAAATA CGATCCTTCT CTCTCCACCT
CTCTCTTCTA CGTAACCGCT CGCTACGGCG GCGGCGGCGG CGGCGGCTCT CGCTCCTTCG GCTCCGGCGA CTCCAGGAGA
CGCCAGCCCG AAACCGACGA CGACCAGGCT CTCGACCTCT CCACCCTCAG GTCAGATACC GTGAGGCTTA TTGATCAGAA
CCAGAATATG GTTGGAGTAA TGTCAATTGA TGACGCCATT CAAATGGCTG AGGATGTCGA ACTTGATTTG GTAATATTAT
CCCCAGATGC AGATCCTCCT GTTGTTAGAA TAATGAATTA CAGCAAATAT CGATATGAAC AACAGAAGAA GAAAAGAGGA
CAGCAGAAGA AAAGTGCTGC TAATCGGATG GATTTGAAGG AGCTCAAAAT GGGTTACAAC ATAGATGAGC ATGATTATTC
AGTGCGTTTG AGAGCTGCAC GGAAATTTTT GAAAGACGGT GACAAGGTTA AGGTCATAGT AAACCTTAAG GGTCGTGAAA
ATGAATTCAG GAATATTGCT ATTGAGCTTC TTACACGTTT TCAGAATGAT GTTGGGGAGG TTGGACTAGA GGAGGCAAAA
AACTTCCGTG ACAGAAACAT CTTCATAATT TTGGTTCCAA ACAAAGCTGC TGTACAGAAA ACTCAAGAAC CACCAAAGAA
AAAAGACAAG TCCAACAAAG ATGAAGTCTC CGCCAGTGTC CAAGCGTAAC CGAAAACTTC CAAGCTAGTT TCTAATTGTA
GAATGAATTG AGTAACTTTT ATTGGTCTGA GTTGTATGAT TTATAATTCA TGTGCAATAA TAGCATATAA ATTCTCGAGG
ATTTTAATTA TAGAGGCAGC CTTGGCTTTT CGAACACAAG TTGCTGAAGG GATACCAGTA TACCACTAAC CGCTCTTCAC
AAGACTAATC ATAAAAGGAC AATCGCATGT GGGTAATATA TGCTCATTTA ATTTTAGTTT GACAGTAATA TTTGCATACT
TCTGTTCGAA TTCAATGCAT GTAAAGTTGG TGACAGGTGG AAGGGTCCAT ACCTTGATGA AGACAAGAAG CACATGGTCC
TAACAAACGA TTGATTTGGA AGGAAGCCCG TCAATTTTCG GGTTTGTTCC TGCCTAATAT GGTTAAGCTA ACGCTAAGTA
CCTCTTTTTG GATCCTGCTT ATGTGTAGGT TCTGCTCTAA CGCTTGTTAT TTTAACTAAA GATGTAGAGG CTGCAACTTA
CGGACCTAAC GATTTGAAGG TAGCTTAGTT TTGAAGTGCT TACGTCCCAA GAAAACTAAA ATGTTCCACA TGTTTTTGCT
CCATGAGTAA GCATAACGTA GTCCACTCCT CCTGAAAGCA ACGTGTTATC GTAT

>Vigan.01G412600.01
ATGGCTGGCA TCACCACCGT CCCCTTCAAA CTCTTTCATT ACCACGCCAC ACCTTCTCCT CTCTTCACTT CTTCTCATTC
CAAACTCTTC GGCCTTTCCC TCTCTAATCC CAATTCCCTC AAATACGATC CTTCTCTCTC CACCTCTCTC TTCTACGTAA
CCGCTCGCTA CGGCGGCGGC GGCGGCGGCG GCTCTCGCTC CTTCGGCTCC GGCGACTCCA GGAGACGCCA GCCCGAAACC
GACGACGACC AGGCTCTCGA CCTCTCCACC CTCAGGTCAG ATACCGTGAG GCTTATTGAT CAGAACCAGA ATATGGTTGG
AGTAATGTCA ATTGATGACG CCATTCAAAT GGCTGAGGAT GTCGAACTTG ATTTGGTAAT ATTATCCCCA GATGCAGATC
CTCCTGTTGT TAGAATAATG AATTACAGCA AATATCGATA TGAACAACAG AAGAAGAAAA GAGGACAGCA GAAGAAAAGT
GCTGCTAATC GGATGGATTT GAAGGAGCTC AAAATGGGTT ACAACATAGA TGAGCATGAT TATTCAGTGC GTTTGAGAGC
TGCACGGAAA TTTTTGAAAG ACGGTGACAA GGTTAAGGTC ATAGTAAACC TTAAGGGTCG TGAAAATGAA TTCAGGAATA
TTGCTATTGA GCTTCTTACA CGTTTTCAGA ATGATGTTGG GGAGGTTGGA CTAGAGGAGG CAAAAAACTT CCGTGACAGA
AACATCTTCA TAATTTTGGT TCCAAACAAA GCTGCTGTAC AGAAAACTCA AGAACCACCA AAGAAAAAAG ACAAGTCCAA
CAAAGATGAA GTCTCCGCCA GTGTCCAAGC GTAA

>Vigan.01G412600.01
MAGITTVPFK LFHYHATPSP LFTSSHSKLF GLSLSNPNSL KYDPSLSTSL FYVTARYGGG GGGGSRSFGS GDSRRRQPET
DDDQALDLST LRSDTVRLID QNQNMVGVMS IDDAIQMAED VELDLVILSP DADPPVVRIM NYSKYRYEQQ KKKRGQQKKS
AANRMDLKEL KMGYNIDEHD YSVRLRAARK FLKDGDKVKV IVNLKGRENE FRNIAIELLT RFQNDVGEVG LEEAKNFRDR
NIFIILVPNK AAVQKTQEPP KKKDKSNKDE VSASVQA*