GBrowse Details

Vigan.01G415400.01

Basic Information:
Name: Vigan.01G415400.01
Multiple alignment
Variant Information
Position: Chr01:55146128..55151919 (- strand)
Length: 5792
Functional Information:
Description: Similar to Uncharacterized protein. [I1JGN9, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
InterPro: Fatty acid desaturase, type 1 (IPR005804)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.70,19.97,14.14,84.58,13.32,8.48,16.08,16.51
Arabidopsis thaliana homolog: AT4G30950.1
Automatic updates:
Name: NM_001251307 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max plastid omega-6 desaturase (LOC547807), mRNA.
PubMed ID: 8066133 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:55146128..55146635 (- strand)
Length: 508
Type: three_prime_UTR
Position: Chr01:55146636..55146797 (- strand)
Length: 162
Type: CDS
Position: Chr01:55147116..55147230 (- strand)
Length: 115
Type: CDS
Position: Chr01:55147489..55147607 (- strand)
Length: 119
Type: CDS
Position: Chr01:55148852..55149029 (- strand)
Length: 178
Type: CDS
Position: Chr01:55149204..55149326 (- strand)
Length: 123
Type: CDS
Position: Chr01:55150234..55150385 (- strand)
Length: 152
Type: CDS
Position: Chr01:55150504..55150647 (- strand)
Length: 144
Type: CDS
Position: Chr01:55150924..55151165 (- strand)
Length: 242
Type: CDS
Position: Chr01:55151498..55151552 (- strand)
Length: 55
Type: CDS
Position: Chr01:55151630..55151668 (- strand)
Length: 39
Type: CDS
Position: Chr01:55151669..55151919 (- strand)
Length: 251
Type: five_prime_UTR


>Vigan.01G415400.01
ATTTGCACAT GAAAAAATAT AATAAATAAA AATGTAAACA AAAAGGCGAG GAGGAAATGG TGCAGTGGAC GGAGAAGAAA
CGACACCGTC CAATACATAC ATGCGGCTGC GAAGGTCTAT TAAAGGAAGT CCACATTCTG AGGGTCCCAC GCTCTCACAC
ACTTTAACAT ATAAAATAGA ACAGCAAAAG CTTTATCTCT TTCGAAGCCC CAAAATCCTC TTTTGTGAGC TCAGATTAAT
CTGTGCTCAC AATGGCCTGC ACTCTCGCTG ATTCATTACT CCTATTCAAG GGCTCTTTTC AGAAACCACT TTGCAGGAGA
GACATTACTG CTCACTACTC TCCAGGAATA TTTAGTTTAA ACAGTGATGG GCTTATCCGG AAAGGGTTCA GGCGTCAAAG
GAGTTTTGTT ACTAGGAATA AGGTTACTTT CATACGTGCT GTGGCAGTTC CAGTACAACA ACCTGCTCCT GTGGAAGATG
TGGAGTATAG AAAACAGCTA GCTGAAGACT ACGGTTTCAG GCAAATTGGA GAGCCGCTTC CAGCTGATGT TACTTTAAAG
GATGTCATCA GTTCCCTTCC TAAAGAGGTC TTTGAGATTG ATGATGTGAA AGCATGGAAA TCTGTTTTGA TATCTATCAC
TTCTTATGCA TTGGGGATCT TCATGATTTC CAAAGCTCCC TGGTATCTTC TTCCTCTCGC TTGGGCATGG ACTGGGACTG
CAGTAACTGG GTTCTTTGTT ATAGGACATG ATTGTGCTCA CAAATCATTT TCATCCAACA AATTGATAGA AGACATTGTT
GGGACCCTGG CTTTTATGCT ACTGATTTAT CCATATGAGC CATGGCGATT TAAGCATGAC AAACATCATG CAAAAACAAA
CATGCTGTTG GAAGATACTG CTTGGCAGCC TGTTGCGAAG GACGAGTTTG AATCTTCTCC CCTTTTGAGG AAAGCAATAA
TATATGGATA TGGTCCATTT CGATGTTGGA TGTCTATAGC TCACTGGTTG ATGTGGCACT TTGATTTGAA GAAGTTCAGA
CCAAGTGAAG TAAACAGGGT GAAGATAAGT TTAGCGTGTG TGTTTTCCTT TATAGCAATT GGGTGGCCAT TAATCATTTA
CAAGACAGGA ATCATGGGAT GGATAAAATT CTGGTTGATG CCATGGTTGG GCTATCACTT CTGGATGAGT ACGTTTACCA
TGGTACATCA TACTGCGCCG CATATTCCAT TCAGAAACAC AGAAGAGTGG AATGCTGCAC AAGCACAGCT TAATGGAACT
GTTCATTGTG ATTACCCTAA ATGGATCGAG ATCCTATGTC ATGATATTAA TGTCCATATT CCACACCACA TATCCCCGAG
GATACCAAGC TATAATTTAA GAGCAGCCCA TAAGTCCATC GAAGAAAATT GGGGAAAGTA TCTGAATGAG GCTAGTTGGA
ATTGGAGATT GATGAAGACA ATCATGACAG TGTGTCATGT GTACGATAAA GAGCAAAATT ATGTTGCCTT CGACGAACTC
GCCCCTGAAG ATTCTCGTCC AATTACATTT TTGAAGGAAA GCATGCCTGA TTATGCTTAG TTTAGTCCAT CCAACCTGCC
TTTTTTCTCA TGTAATTTTT TATTTATCAA ATTAGGTTCC TATGCCATCG GTTTTCTGTT CACGTTTTCG ATCTTGTTTA
AAATGGTTAT TTTTTCATAT CTGGTTTAGT AAGAAAATTG CTTGTTGCTC TCGAAGTTCA CACGTAATAG GGTAATGATG
TTACCAAGTT GCGGATTATC CGCCAAGCCA CCGAGAAGCA TTCATTAAGT TAAAGCAGAC GTTGTGGTAA TCTGAACACT
GGGGTTCTTG TTATCACGTG GGAAGAATAA TATACTATAA AGTTGTCTGA CGGATCAAAA AGCACGTGGA CCGTGGCACA
GTGGTTTGAG CCTACTGAGT TACTGCTGTA ATGACAGTAT TTTGTTATTC ATTATTGCTC TTTTGGTTGT ATTGTATTTT
GTTACTGAAA TTCATGTATA CAGTTTCTCG CTAAAAAAAG AATATACAGA GTCTTTTCAT CTAATGGAAA CTTCATATTT
AACCATAA

>Vigan.01G415400.01
ATGGCCTGCA CTCTCGCTGA TTCATTACTC CTATTCAAGG GCTCTTTTCA GAAACCACTT TGCAGGAGAG ACATTACTGC
TCACTACTCT CCAGGAATAT TTAGTTTAAA CAGTGATGGG CTTATCCGGA AAGGGTTCAG GCGTCAAAGG AGTTTTGTTA
CTAGGAATAA GGTTACTTTC ATACGTGCTG TGGCAGTTCC AGTACAACAA CCTGCTCCTG TGGAAGATGT GGAGTATAGA
AAACAGCTAG CTGAAGACTA CGGTTTCAGG CAAATTGGAG AGCCGCTTCC AGCTGATGTT ACTTTAAAGG ATGTCATCAG
TTCCCTTCCT AAAGAGGTCT TTGAGATTGA TGATGTGAAA GCATGGAAAT CTGTTTTGAT ATCTATCACT TCTTATGCAT
TGGGGATCTT CATGATTTCC AAAGCTCCCT GGTATCTTCT TCCTCTCGCT TGGGCATGGA CTGGGACTGC AGTAACTGGG
TTCTTTGTTA TAGGACATGA TTGTGCTCAC AAATCATTTT CATCCAACAA ATTGATAGAA GACATTGTTG GGACCCTGGC
TTTTATGCTA CTGATTTATC CATATGAGCC ATGGCGATTT AAGCATGACA AACATCATGC AAAAACAAAC ATGCTGTTGG
AAGATACTGC TTGGCAGCCT GTTGCGAAGG ACGAGTTTGA ATCTTCTCCC CTTTTGAGGA AAGCAATAAT ATATGGATAT
GGTCCATTTC GATGTTGGAT GTCTATAGCT CACTGGTTGA TGTGGCACTT TGATTTGAAG AAGTTCAGAC CAAGTGAAGT
AAACAGGGTG AAGATAAGTT TAGCGTGTGT GTTTTCCTTT ATAGCAATTG GGTGGCCATT AATCATTTAC AAGACAGGAA
TCATGGGATG GATAAAATTC TGGTTGATGC CATGGTTGGG CTATCACTTC TGGATGAGTA CGTTTACCAT GGTACATCAT
ACTGCGCCGC ATATTCCATT CAGAAACACA GAAGAGTGGA ATGCTGCACA AGCACAGCTT AATGGAACTG TTCATTGTGA
TTACCCTAAA TGGATCGAGA TCCTATGTCA TGATATTAAT GTCCATATTC CACACCACAT ATCCCCGAGG ATACCAAGCT
ATAATTTAAG AGCAGCCCAT AAGTCCATCG AAGAAAATTG GGGAAAGTAT CTGAATGAGG CTAGTTGGAA TTGGAGATTG
ATGAAGACAA TCATGACAGT GTGTCATGTG TACGATAAAG AGCAAAATTA TGTTGCCTTC GACGAACTCG CCCCTGAAGA
TTCTCGTCCA ATTACATTTT TGAAGGAAAG CATGCCTGAT TATGCTTAG

>Vigan.01G415400.01
MACTLADSLL LFKGSFQKPL CRRDITAHYS PGIFSLNSDG LIRKGFRRQR SFVTRNKVTF IRAVAVPVQQ PAPVEDVEYR
KQLAEDYGFR QIGEPLPADV TLKDVISSLP KEVFEIDDVK AWKSVLISIT SYALGIFMIS KAPWYLLPLA WAWTGTAVTG
FFVIGHDCAH KSFSSNKLIE DIVGTLAFML LIYPYEPWRF KHDKHHAKTN MLLEDTAWQP VAKDEFESSP LLRKAIIYGY
GPFRCWMSIA HWLMWHFDLK KFRPSEVNRV KISLACVFSF IAIGWPLIIY KTGIMGWIKF WLMPWLGYHF WMSTFTMVHH
TAPHIPFRNT EEWNAAQAQL NGTVHCDYPK WIEILCHDIN VHIPHHISPR IPSYNLRAAH KSIEENWGKY LNEASWNWRL
MKTIMTVCHV YDKEQNYVAF DELAPEDSRP ITFLKESMPD YA*