GBrowse Details

Vigan.01G417900.01

Basic Information:
Name: Vigan.01G417900.01
Multiple alignment
Variant Information
Position: Chr01:55346814..55348266 (- strand)
Length: 1453
Functional Information:
Description: Similar to Uncharacterized protein. [Q38JC8, Medicago truncatula]
GO: Molecular Function: transporter activity (GO:0005215)
InterPro: Lipocalin/cytosolic fatty-acid binding domain (IPR000566)
Lipocalin, bacterial (IPR002446)
Calycin-like (IPR011038)
Calycin (IPR012674)
Lipocalin conserved site (IPR022272)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:120.62,19.11,14.07,19.55,27.60,114.02,3.52,15.46
Automatic updates:
Name: NM_001248916 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max temperature-induced lipocalin-like (LOC100500030), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001251155 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306133 (LOC100306133), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55346814..55347049 (- strand)
Length: 236
Type: three_prime_UTR
Position: Chr01:55347050..55347232 (- strand)
Length: 183
Type: CDS
Position: Chr01:55347673..55348263 (- strand)
Length: 591
Type: CDS
Position: Chr01:55348264..55348266 (- strand)
Length: 3
Type: five_prime_UTR


>Vigan.01G417900.01
AATATGACAT CAATGAATTA CATTCACTGT ACAGGTGTAC GATCACAATT CATCCACGGT CACAACTCTA TCACACTTGC
AAGATCAAAA TCGAACGTTG AAGCAAAGCT AACCTTGAAA CCTTGTACAC CAAAACTGAA ACAACCGTCT TTGGTGGTAT
TTTGTTCTGA CTCTGTTGTT CTTGTGAAGC GTAACCCAAT AGCATCATTG ACATTGCTGT GGATGACGAC GAAAGTGATG
GAGGTGGTGA AAGGTCTGGA CTTGAAGCGG TACATGGGAC GGTGGTACGA GATTGCGTGT TTTCCGTCGA GGTTTCAGCC
CAGTGACGGC GTCAACACAA GAGCCACCTA CACTTTGGGC GATGACGGCA CTGTGAGAGT TCTGAATGAA ACTTGGAGCG
GTGGGAAAAG AAGCTTCATC GAGGGCACTG CTCATAAGGC AGATCCCGAT AGTGATGAGG CCAAATTGAA GGTCAGGTTT
TGGGTTCCTC CTTTCTTACC CGTCATTCCT GTTACTGGGG ATTACTGGGT TTTGTTCATC GATCCTGATT ATCAGTATGC
TCTCATTGGC CAACCTAGCA GGAATTATCT TTGGATATTG TCGAGGAAGA ATGAAATGGA TGAGGAAATT TACAAGGAGC
TTGTTAAGAG AGCCAAGGAT GAGGGCTATG ATGTGAGCAA ACTCCACAAG ACTCCACACA CGAATCCTCC ACCTGAGAGA
GAAGGTCCTG AGGACACCAA AGGCGTTTGG TGGTTCAAGT CCCTTCTGGG GAAATAGTAA TTATATCTGA AGGTGAAAGA
GAGTGTTTCA TATCAGTAAT AAAAGTAAAT GCAAAATATA CCAAGATCAT GATGATGATG ATGATGATAT GAACTTTGTA
AAGTTTACCT TTGATGCTCT TATTGTGTTT GTTTTTAGTT GAATCCGTTG TCTGAACTTG AATACTTTAC AGCTCTGATT
GTTTGTTTTT AGTTGTTCTT GGTGAGAATC CAAACTTCAA TACTTTACAC CTA

>Vigan.01G417900.01
ATGACATCAA TGAATTACAT TCACTGTACA GGTGTACGAT CACAATTCAT CCACGGTCAC AACTCTATCA CACTTGCAAG
ATCAAAATCG AACGTTGAAG CAAAGCTAAC CTTGAAACCT TGTACACCAA AACTGAAACA ACCGTCTTTG GTGGTATTTT
GTTCTGACTC TGTTGTTCTT GTGAAGCGTA ACCCAATAGC ATCATTGACA TTGCTGTGGA TGACGACGAA AGTGATGGAG
GTGGTGAAAG GTCTGGACTT GAAGCGGTAC ATGGGACGGT GGTACGAGAT TGCGTGTTTT CCGTCGAGGT TTCAGCCCAG
TGACGGCGTC AACACAAGAG CCACCTACAC TTTGGGCGAT GACGGCACTG TGAGAGTTCT GAATGAAACT TGGAGCGGTG
GGAAAAGAAG CTTCATCGAG GGCACTGCTC ATAAGGCAGA TCCCGATAGT GATGAGGCCA AATTGAAGGT CAGGTTTTGG
GTTCCTCCTT TCTTACCCGT CATTCCTGTT ACTGGGGATT ACTGGGTTTT GTTCATCGAT CCTGATTATC AGTATGCTCT
CATTGGCCAA CCTAGCAGGA ATTATCTTTG GATATTGTCG AGGAAGAATG AAATGGATGA GGAAATTTAC AAGGAGCTTG
TTAAGAGAGC CAAGGATGAG GGCTATGATG TGAGCAAACT CCACAAGACT CCACACACGA ATCCTCCACC TGAGAGAGAA
GGTCCTGAGG ACACCAAAGG CGTTTGGTGG TTCAAGTCCC TTCTGGGGAA ATAG

>Vigan.01G417900.01
MTSMNYIHCT GVRSQFIHGH NSITLARSKS NVEAKLTLKP CTPKLKQPSL VVFCSDSVVL VKRNPIASLT LLWMTTKVME
VVKGLDLKRY MGRWYEIACF PSRFQPSDGV NTRATYTLGD DGTVRVLNET WSGGKRSFIE GTAHKADPDS DEAKLKVRFW
VPPFLPVIPV TGDYWVLFID PDYQYALIGQ PSRNYLWILS RKNEMDEEIY KELVKRAKDE GYDVSKLHKT PHTNPPPERE
GPEDTKGVWW FKSLLGK*