GBrowse Details

Vigan.01G418300.01

Basic Information:
Name: Vigan.01G418300.01
Multiple alignment
Variant Information
Position: Chr01:55368671..55373711 (- strand)
Length: 5041
Functional Information:
Description: Similar to Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2. [XP_007011986.1, Theobroma cacao]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Conserved hypothetical protein CHP04168 (IPR027629)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.73,13.65,12.02,11.90,61.43,7.23,30.06,10.44
Arabidopsis thaliana homolog: AT5G58200.2
Automatic updates:
Name: NM_001255836 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100797661 (LOC100797661), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55368671..55369483 (- strand)
Length: 813
Type: three_prime_UTR
Position: Chr01:55369484..55369854 (- strand)
Length: 371
Type: CDS
Position: Chr01:55370156..55370230 (- strand)
Length: 75
Type: CDS
Position: Chr01:55370330..55370436 (- strand)
Length: 107
Type: CDS
Position: Chr01:55370844..55370969 (- strand)
Length: 126
Type: CDS
Position: Chr01:55371434..55371469 (- strand)
Length: 36
Type: CDS
Position: Chr01:55371834..55371948 (- strand)
Length: 115
Type: CDS
Position: Chr01:55372318..55372339 (- strand)
Length: 22
Type: CDS
Position: Chr01:55373385..55373435 (- strand)
Length: 51
Type: CDS
Position: Chr01:55373534..55373671 (- strand)
Length: 138
Type: CDS
Position: Chr01:55373672..55373711 (- strand)
Length: 40
Type: five_prime_UTR


>Vigan.01G418300.01
GTAAAATAAG AGTCCTCTTT AGAGAAGGTT GTTCATACCC ATGTTGAGCG CGTGCATTCA CGCGTCTACC GTATTTCCCT
CCTTTATTAG TCACTGTGTG AGCCCGAAGA AGCTCGACCT CTCTTGCTCT TCAATGGCCG CGTCGTCCTC TATTCGAATC
GTCGTCGTCG GTGATGTGCA TGATTACTGG AACTTTGAAC AAGATTCCAA AGCGCTTGAG TTCTTGCAGC CAGATTTGGT
GCTGTTTACA GGTGATTTTG GTGATGAAAA TGTTGAAGTC GTTCAGAGTG TTGCAAATGT TGAATTTTCT AAGGCAGTTA
TATTGGGAAA CCACGATGCC TGGTTCACTA AACAGTTTTC TAAAAGCCAG GAGAAGGATA AAGTTCAGCT TCAGCTAGAA
TGCCTTGGTG AGGAGCATGT GGCTTATCGA CGATCAGACT TCCCTCTAAT AAAAGTAAGC GTTGTTGGTG GACGGCCATT
TTCTTGTGGG GGTAAACCAT TGTCGCAGAA AAAGCTTCTT TCTGCAAGAT ATGGAATTAA AGACATGGAT GAGAGTGCTA
AGAGAATCCA GAAAGCTGCT CGTGGTACAC CGGATGATCA TTTTCTTATA TTACTTGCAC ATAACGGGCC CTCAGGCCTT
GGTTCTGATT TGAATGATAT ATGTGGAAAG GACTGGGAAT TTGGGGGTAA TGGTGATTAT GGTGATCCAG ATCTAGCACA
CGCCATATCC TTGCTAAAAG AGAATGATCA AGTATCAATT CCCTTGGTTG TATTTGGTCA CATGCACAAA GAGCTGGCAT
ATGGCAATGG CTTTAGGAAA ATGATTGTGG TTGGCCCTGA TAACACCATA TACTTAAATG GGGCAATTGT TCCTAGGGTC
AAAAGGTTGA ATGATGAAGA CAAGAGAAGC TTAGACGAGG AAAGTGCTCT TTCCTCATCA GAGGCAAAAG GTACCAGAAG
AGCCTTTACT TTAGTTGAGA TTTCAGAAGG GAGAGTTGCT AAGATTGCAG AAAGTTGGGT CTCAGTCGTT GAAGATAGGA
CCACATTAGA AGAAGAGCAC ATACTATATG AGGTCAGCTA GGATCCTCAT CCTCCACATT TAGGCTCCTG CCTCTGTCAC
ACCCATTTTA ATGCGTAGAT GAATAAAGCC AAGGGTGAAA TATACATCGA AGCTGATTCC TTATCCCGAT GAATAGTATT
TAATTTCATT GTTAATAACT ACTGTATAGA CTACACAAAT GGCATATGCT CTTATACTCA TTCCTTATCT AGCTGGTGTG
ATTTATTGCT TGTACCGCAC CTCTATTTCA TGTGGCAAGT CAAATGTGAA GGGCTCGTGT CAAATTATTT TCTTCCTAGC
ATAGAGGACT GCACCCCTGT TTGTTTTTGT TGTCCTTGCG CATTTGGATT CATGTTGAAT GATATGGGTG GGTCTATTGG
ATTACACAGG CTGTTCCATT TGCCGTCATG GTGACTAATA TTTTTAACCT GGCACTGTCT GCTTGTGGTG CCATTGTATT
GTCCAAATTT TACTCCATTT TGCAAGCACT ATACACGGAT TCTGCAGCTG ATAGGTTTGG AGTACATCAT TTTCATGTTT
GTCTTTTTTT TTTTTTTCTG GACCCAATGA AGATTGCAGT GCTTTGGCAG ATGGCTGTGA TCCCATTTGG TCATGAAATG
ACTCCCCTGA CTTTTAGCTC TAAAGTAAAG GTTAAAGAGG CTGTGATACT GAAGGTTGAC CAAACTTTTA ATGATTTGAT
GCTGGCTTGT TTCCTCTTTT CATTAATTTT TTCTCTTTTG ATGAGTTAAG AAAAAGTTTC ATTCACATGA AAGAAATGAC
CCATTTCCTA GACTTACTCG ATTAACCTTG CTATTGGTGA ATGACATATT CCAC

>Vigan.01G418300.01
ATGTTGAGCG CGTGCATTCA CGCGTCTACC GTATTTCCCT CCTTTATTAG TCACTGTGTG AGCCCGAAGA AGCTCGACCT
CTCTTGCTCT TCAATGGCCG CGTCGTCCTC TATTCGAATC GTCGTCGTCG GTGATGTGCA TGATTACTGG AACTTTGAAC
AAGATTCCAA AGCGCTTGAG TTCTTGCAGC CAGATTTGGT GCTGTTTACA GGTGATTTTG GTGATGAAAA TGTTGAAGTC
GTTCAGAGTG TTGCAAATGT TGAATTTTCT AAGGCAGTTA TATTGGGAAA CCACGATGCC TGGTTCACTA AACAGTTTTC
TAAAAGCCAG GAGAAGGATA AAGTTCAGCT TCAGCTAGAA TGCCTTGGTG AGGAGCATGT GGCTTATCGA CGATCAGACT
TCCCTCTAAT AAAAGTAAGC GTTGTTGGTG GACGGCCATT TTCTTGTGGG GGTAAACCAT TGTCGCAGAA AAAGCTTCTT
TCTGCAAGAT ATGGAATTAA AGACATGGAT GAGAGTGCTA AGAGAATCCA GAAAGCTGCT CGTGGTACAC CGGATGATCA
TTTTCTTATA TTACTTGCAC ATAACGGGCC CTCAGGCCTT GGTTCTGATT TGAATGATAT ATGTGGAAAG GACTGGGAAT
TTGGGGGTAA TGGTGATTAT GGTGATCCAG ATCTAGCACA CGCCATATCC TTGCTAAAAG AGAATGATCA AGTATCAATT
CCCTTGGTTG TATTTGGTCA CATGCACAAA GAGCTGGCAT ATGGCAATGG CTTTAGGAAA ATGATTGTGG TTGGCCCTGA
TAACACCATA TACTTAAATG GGGCAATTGT TCCTAGGGTC AAAAGGTTGA ATGATGAAGA CAAGAGAAGC TTAGACGAGG
AAAGTGCTCT TTCCTCATCA GAGGCAAAAG GTACCAGAAG AGCCTTTACT TTAGTTGAGA TTTCAGAAGG GAGAGTTGCT
AAGATTGCAG AAAGTTGGGT CTCAGTCGTT GAAGATAGGA CCACATTAGA AGAAGAGCAC ATACTATATG AGGTCAGCTA
G

>Vigan.01G418300.01
MLSACIHAST VFPSFISHCV SPKKLDLSCS SMAASSSIRI VVVGDVHDYW NFEQDSKALE FLQPDLVLFT GDFGDENVEV
VQSVANVEFS KAVILGNHDA WFTKQFSKSQ EKDKVQLQLE CLGEEHVAYR RSDFPLIKVS VVGGRPFSCG GKPLSQKKLL
SARYGIKDMD ESAKRIQKAA RGTPDDHFLI LLAHNGPSGL GSDLNDICGK DWEFGGNGDY GDPDLAHAIS LLKENDQVSI
PLVVFGHMHK ELAYGNGFRK MIVVGPDNTI YLNGAIVPRV KRLNDEDKRS LDEESALSSS EAKGTRRAFT LVEISEGRVA
KIAESWVSVV EDRTTLEEEH ILYEVS*