GBrowse Details

Vigan.01G418700.01

Basic Information:
Name: Vigan.01G418700.01
Multiple alignment
Variant Information
Position: Chr01:55393389..55399628 (- strand)
Length: 6240
Functional Information:
Description: Similar to Defective in cullin neddylation protein. [I1MTX5, Glycine max]
GO: Molecular Function: calcium ion binding (GO:0005509)
InterPro: Potentiating neddylation domain (IPR005176)
EF-hand domain pair (IPR011992)
Defective-in-cullin neddylation protein (IPR014764)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.02,6.16,8.78,7.50,18.00,13.23,13.31,7.62
Automatic updates:
Name: NM_001349737 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cullin-binding superfamily protein (LOC100777526), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55393389..55393632 (- strand)
Length: 244
Type: three_prime_UTR
Position: Chr01:55393633..55393734 (- strand)
Length: 102
Type: CDS
Position: Chr01:55394929..55394994 (- strand)
Length: 66
Type: CDS
Position: Chr01:55395398..55395504 (- strand)
Length: 107
Type: CDS
Position: Chr01:55395610..55395670 (- strand)
Length: 61
Type: CDS
Position: Chr01:55395792..55395875 (- strand)
Length: 84
Type: CDS
Position: Chr01:55397252..55397288 (- strand)
Length: 37
Type: CDS
Position: Chr01:55397381..55397455 (- strand)
Length: 75
Type: CDS
Position: Chr01:55397868..55397952 (- strand)
Length: 85
Type: CDS
Position: Chr01:55399299..55399368 (- strand)
Length: 70
Type: CDS
Position: Chr01:55399369..55399628 (- strand)
Length: 260
Type: five_prime_UTR


>Vigan.01G418700.01
CAAAAGTTAT GACAAAGTGA TTTCAATTAA CTCACAATCT AATAATTAAG TTCATACAAT TAATTCCCAA AGGGAAAAAA
AAGATTGATG GAAGGAGCAC TAATTCCAAA GCTATAAAAC CTTGTTAAAC CTTGAATCTG TGCTGGTTTC TCTTCGTCAT
CATCCTCCGT GAATAGGGTT TACTTTCTTG AATTTCTTTC GAATCGATTC CATTGTGTCT CTCAAAGATT TGACAGTGTT
TGGTTGCACA ATCTGTGAAG ATGCCTCGTC CCAAAAGAAA AGCGGCCCCA CCAATCACTT CTTCTGATGT TGATTCTTCT
CTTCGTCCCG AACCAAAGAA AGCAACCACA AAGCAATTAG ATCGAATAGA TAACATATTC GAATCGTATG CAAATAAGTC
ACTGGGTTTG ATTGACCCAG ACGGGATTGT GGCATTTTGT AAAGATGTGC ATGTGGATCA TACAGATGTT AGAATGCTGA
TACTTGCTTG GAAAATGAAA GCTGAAAAAC AAGGGTATTT TTCCAAGGAT GAGTGGCGAA AAGGGCTCAA ATGTTTAGGG
GCCGACACAC TCCCAAAGTT AAGAAAGGTC ATTGGTGGAC TGCAGAAAGA GGTGATGGTA CAAGAGTGCT TTGAAGATTT
TTATTCCTAT GCATTTCACT ACTGCCTGAC GGAAGATAAG CAAAGGAGTG TAGATATTGA GACCATCTGT GAGCTGTTGA
ATGTCGTTCT GAGATCTGAT TTCCCTACTC AAGTTAATTT ATTAACTGAG TATCTAAAGG TTCAAAATGA CTACAGGGCA
CTAAACATAG ATCACTGGAG AAATTTTTAT CGGTTTTTTA AGGAGGTAAG TCTCAGTGAT CTTCTAAGTT ATGATTCCAG
TCAAGCATGG CCCGTGATCC TCGACAATTT TGTTGAATGG TTAAAAGAAA AACAAGAGAA AATATAGTTC TCACCTTTCT
CAAGTTTATG TTCATTTTTA ATCTGCCGAC TCCGAACGAG AATACTGTTT TGAAGCGGAT ATACAATTGT ATATGGCTGA
TCTGAGTAAT CAGTTCGCAG TTTTTCTGCA TGTAACAACA ACTTCATACA TTGTCAACTG TCAAAGTTAT ATTCACTTTT
CTTCATCTGG ATATACTGTT TTAAGCAAAT TTTGTTTCAG TTGCCAAAGT TCCTGAATCT TTTATCCATT T

>Vigan.01G418700.01
ATGCCTCGTC CCAAAAGAAA AGCGGCCCCA CCAATCACTT CTTCTGATGT TGATTCTTCT CTTCGTCCCG AACCAAAGAA
AGCAACCACA AAGCAATTAG ATCGAATAGA TAACATATTC GAATCGTATG CAAATAAGTC ACTGGGTTTG ATTGACCCAG
ACGGGATTGT GGCATTTTGT AAAGATGTGC ATGTGGATCA TACAGATGTT AGAATGCTGA TACTTGCTTG GAAAATGAAA
GCTGAAAAAC AAGGGTATTT TTCCAAGGAT GAGTGGCGAA AAGGGCTCAA ATGTTTAGGG GCCGACACAC TCCCAAAGTT
AAGAAAGGTC ATTGGTGGAC TGCAGAAAGA GGTGATGGTA CAAGAGTGCT TTGAAGATTT TTATTCCTAT GCATTTCACT
ACTGCCTGAC GGAAGATAAG CAAAGGAGTG TAGATATTGA GACCATCTGT GAGCTGTTGA ATGTCGTTCT GAGATCTGAT
TTCCCTACTC AAGTTAATTT ATTAACTGAG TATCTAAAGG TTCAAAATGA CTACAGGGCA CTAAACATAG ATCACTGGAG
AAATTTTTAT CGGTTTTTTA AGGAGGTAAG TCTCAGTGAT CTTCTAAGTT ATGATTCCAG TCAAGCATGG CCCGTGATCC
TCGACAATTT TGTTGAATGG TTAAAAGAAA AACAAGAGAA AATATAG

>Vigan.01G418700.01
MPRPKRKAAP PITSSDVDSS LRPEPKKATT KQLDRIDNIF ESYANKSLGL IDPDGIVAFC KDVHVDHTDV RMLILAWKMK
AEKQGYFSKD EWRKGLKCLG ADTLPKLRKV IGGLQKEVMV QECFEDFYSY AFHYCLTEDK QRSVDIETIC ELLNVVLRSD
FPTQVNLLTE YLKVQNDYRA LNIDHWRNFY RFFKEVSLSD LLSYDSSQAW PVILDNFVEW LKEKQEKI*