GBrowse Details

Vigan.01G425400.01

Basic Information:
Name: Vigan.01G425400.01
Multiple alignment
Variant Information
Position: Chr01:55923423..55927017 (+ strand)
Length: 3595
Functional Information:
Description: Similar to Alcohol dehydrogenase. [G7I3F7, Medicago truncatula]
InterPro: Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.41,6.38,43.25,17.42,53.58,38.92,48.99,20.93
Arabidopsis thaliana homolog: AT3G01980.3
Automatic updates:
Name: NM_001255941 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max levodione reductase-like (LOC100791032), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55923423..55923485 (+ strand)
Length: 63
Type: five_prime_UTR
Position: Chr01:55923486..55923577 (+ strand)
Length: 92
Type: CDS
Position: Chr01:55923662..55923867 (+ strand)
Length: 206
Type: CDS
Position: Chr01:55923963..55924192 (+ strand)
Length: 230
Type: CDS
Position: Chr01:55926292..55926570 (+ strand)
Length: 279
Type: CDS
Position: Chr01:55926571..55927017 (+ strand)
Length: 447
Type: three_prime_UTR


>Vigan.01G425400.01
TGCTAATTAG GATTTGACTG AGAAAGTTGG TTGGAGTTCA AGCCAGAAAG TTGTTGAGGA AGAATGGAGA AGTCAGGGAA
GAAAGTGCTG CTGACCTCAA ATGGCGACGA AGTTTCGCAG GGTATCGTTT TCCATTTAGC TAAGCAAGGG TGCAGGTTGG
TTTTGCTGGG AGATGAGAGT TGCCTGCGGA GCATCGCGCA CAGAATCATG GATTCCCTCT CCCTATCTGA CAAAGGCACT
GTGCAGGTCG TTGAATTGAA CATGGAAGAC CAGAGCGAAT CGGTTTTCCA ACACTCTGTT GATCAGGCAT GCCAGATTTT
GGGGAAATTG GATGCTTTTG TCAACTGTTA CAGTTACGAA GGAAAAATGC AAGAGCATAT TGAGTTAGCT GAGAGTGAGT
TTAAGAAAAT AGTGAAGATA AATTTTATGG CTGCTTGGTT CTTGTTAAAA GCTGTTGGCC GAAGGATGCG GGATATCAAC
GCCGGGGGCT CCATCGTCTT TTTAACCTCC ATACTTGGCG CTGAAAGGGG TTTGTATCCG GGAGCTGCTG CATATGCCTC
TGTCTTGGCA GGAGTGCAGC AATTAGTGAG GGCTTCGGCT TTGGAGATAG GGAAGTACCA GATCAGAGTT AATGCCATTG
CCCGAGGCCT GCACCTGCAA GATGAATTTC CATTATCCGT GGGAAGGGAA AGAGCAGAGA AATTGGTGAA GGAGGCTGCA
CCGCTTGAGA GATGGCTTGA TGTTAAGAAT GATCTGGCGT CTACTGTCAT TTATCTAATC AGTGATGGAT CATGCTACAT
GACTGGAACA ACCATATACG TCGATGGGGC ACAGTCTATA ACCAGGCCTC GCATGCGCTC CTTTATGTGA ATCATGCTGG
CGCTGAAAGG ATTTTTTCAA GGAATGATCC AACATACACA TTTCTTGCAT CATTGTTGCC CTTAGGAAAT GACTACATTT
CTAATCCAAG TCTTAAACCT TAAACCCCGA AAAACATGTC CGGGGGGCAT GAAATATATA TTCAAATAAG TTATGAGAAG
TTGAAACTGC TCAATCCATA ATTATATAGT GAATGTTAAG CAGCTGCACT TTTGTTGACC AAGTTTGTGG AGACTGTATG
ACTGTGTGCA ATGGATCTAT CAGTCTTATA GCAGGCGGTG GTATGTCAAA AAAGTAAATC ATAAAAAAAA ATATAAAGTA
TTCCATTAAT ATTATTGTGT GTCTATATAT AAAATTTGGG ATTTGCTATC TGATTTACAT TTTTTTATAG TTAAAATGCC
TAAAAAGACT ACACTAAAAT TCAGAACAAC TCTTTCA

>Vigan.01G425400.01
ATGGAGAAGT CAGGGAAGAA AGTGCTGCTG ACCTCAAATG GCGACGAAGT TTCGCAGGGT ATCGTTTTCC ATTTAGCTAA
GCAAGGGTGC AGGTTGGTTT TGCTGGGAGA TGAGAGTTGC CTGCGGAGCA TCGCGCACAG AATCATGGAT TCCCTCTCCC
TATCTGACAA AGGCACTGTG CAGGTCGTTG AATTGAACAT GGAAGACCAG AGCGAATCGG TTTTCCAACA CTCTGTTGAT
CAGGCATGCC AGATTTTGGG GAAATTGGAT GCTTTTGTCA ACTGTTACAG TTACGAAGGA AAAATGCAAG AGCATATTGA
GTTAGCTGAG AGTGAGTTTA AGAAAATAGT GAAGATAAAT TTTATGGCTG CTTGGTTCTT GTTAAAAGCT GTTGGCCGAA
GGATGCGGGA TATCAACGCC GGGGGCTCCA TCGTCTTTTT AACCTCCATA CTTGGCGCTG AAAGGGGTTT GTATCCGGGA
GCTGCTGCAT ATGCCTCTGT CTTGGCAGGA GTGCAGCAAT TAGTGAGGGC TTCGGCTTTG GAGATAGGGA AGTACCAGAT
CAGAGTTAAT GCCATTGCCC GAGGCCTGCA CCTGCAAGAT GAATTTCCAT TATCCGTGGG AAGGGAAAGA GCAGAGAAAT
TGGTGAAGGA GGCTGCACCG CTTGAGAGAT GGCTTGATGT TAAGAATGAT CTGGCGTCTA CTGTCATTTA TCTAATCAGT
GATGGATCAT GCTACATGAC TGGAACAACC ATATACGTCG ATGGGGCACA GTCTATAACC AGGCCTCGCA TGCGCTCCTT
TATGTGA

>Vigan.01G425400.01
MEKSGKKVLL TSNGDEVSQG IVFHLAKQGC RLVLLGDESC LRSIAHRIMD SLSLSDKGTV QVVELNMEDQ SESVFQHSVD
QACQILGKLD AFVNCYSYEG KMQEHIELAE SEFKKIVKIN FMAAWFLLKA VGRRMRDINA GGSIVFLTSI LGAERGLYPG
AAAYASVLAG VQQLVRASAL EIGKYQIRVN AIARGLHLQD EFPLSVGRER AEKLVKEAAP LERWLDVKND LASTVIYLIS
DGSCYMTGTT IYVDGAQSIT RPRMRSFM*