GBrowse Details

Vigan.01G425500.01

Basic Information:
Name: Vigan.01G425500.01
Multiple alignment
Variant Information
Position: Chr01:55934659..55937967 (+ strand)
Length: 3309
Functional Information:
Description: Similar to Uncharacterized protein. [I1LZU1, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Cellular Component: membrane (GO:0016020)
Molecular Function: hydrolase activity, acting on glycosyl bonds (GO:0016798)
InterPro: Glycoside hydrolase, family 79 (IPR005199)
Glycoside hydrolase, catalytic domain (IPR013781)
Glycoside hydrolase, superfamily (IPR017853)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.49,1.53,9.47,4.81,3.46,41.06,6.17,7.59
Arabidopsis thaliana homolog: AT5G34940.2
Automatic updates:
Name: NM_001255040 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heparanase-like protein (LOC100792087), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55934659..55934894 (+ strand)
Length: 236
Type: five_prime_UTR
Position: Chr01:55934895..55935140 (+ strand)
Length: 246
Type: CDS
Position: Chr01:55935507..55935543 (+ strand)
Length: 37
Type: CDS
Position: Chr01:55935661..55935844 (+ strand)
Length: 184
Type: CDS
Position: Chr01:55935968..55936113 (+ strand)
Length: 146
Type: CDS
Position: Chr01:55936381..55936611 (+ strand)
Length: 231
Type: CDS
Position: Chr01:55936683..55936872 (+ strand)
Length: 190
Type: CDS
Position: Chr01:55936955..55937080 (+ strand)
Length: 126
Type: CDS
Position: Chr01:55937303..55937402 (+ strand)
Length: 100
Type: CDS
Position: Chr01:55937485..55937799 (+ strand)
Length: 315
Type: CDS
Position: Chr01:55937800..55937967 (+ strand)
Length: 168
Type: three_prime_UTR


>Vigan.01G425500.01
CAGAGGAGGC ATTCTCAAGT TTATAAGTGC TGCATTCTTT ACACCAGCAT TTGCAACAGC CAGGCATAAC ATAACTTTCC
TGTGAAGGAA GTTTTATGTC ATTATATTAT CAGCACTCTT TTGTCTCTAT GGCAAGCAAG TAAAATCTGC TGCTGTAGCA
AAGCCTCAGT TCTATGAATT CTCAGCAGCC CATTTGAGAA AAGTCACAAA GATCTTAAAT TTAGCTGAAT CTGGAAATGG
GTTGTCTGAT AAGGCTTCTG GGTCTGTGTC TATGGATGTA CTTGGCAAGC TTAAGCTTCA TTTCAGTGGG TGCTATGTGT
GCAAGAGTGG GAGAAGTTGA GAAAGGGATT GTTTTAGTTC ATGGGAAATG TGCTATTGGA AGGATTGATG ATGATTTTGT
GTGTGCAACT CTGGATTGGT GGCCTCCTCA GAAATGTGAC TATGGAAAAT GTAGTTGGGG GCATGCTTCT CTGCTTAATC
TGGATCTCAA CAACAAAATT TTGTTAAATG CAGTAAAAGC CTTTTCATCT ATGAAAATTA GAGTAGGTGG CACTTTGCAA
GACAAGGTCA TATACGGAAC TGAAGATAAT CGAGAACCCT GTACTCCTTT TGTTTTGAAT GCTAATGAAA TGTTTGGTTT
CACTCGAGGG TGCTTACCGA TGAAGAGGTG GGATGAGCTA AACAGCTTTT TCCAGAAAGC AGGGGCTAAG GTTATCTTTG
GATTAAATGA GCTTGCTGGA AAATCTATAA AGTCTGGTTT TGCTGTTGGA CCTTGGAACT ACACCAATGC TGAATCTTTA
ATACGATACA CTGTCAGAAA GAAGTACCAC ATTCATGGTT GGGAACTTGG GAATGAATTG TGTGGACATG GAATTGGGGT
AAGTGTTGCA GCAGATCAAT ATGCTTCTGA TGTTGCTTCT CTAAGAAAGA TAGTTCAAAA TGAATATAGA GGGATTGAAC
CAAAGCCACT AGTTATTGCT CCTGGAGGCT TCTTTGACGC AGATTGGTTT AAGGAATTTA TAAGCAAGTC TGGTAAATCT
GCAGATGTGG TCACCCACCA CATTTATAAT CTTGGGCCAG GAGTTGATGA CCACTTAATT GAAAGCATTC TTAACCCTTC
CCGTCTGGAT GGAGAGGCTG ACACTTTCAG AAGTCTCAAA GGTATACTTC AAAATTCAAC AAACAAGGCA AAATCATGGG
TTGGTGAGGC AGGAGGGGCC TATAATAGTG GACATCATCT TGTGTCTGAT GCATTTGTCT ACAGTTTCTG GTATTTAGAC
CAGCTTGGCA TGTCAGCTGT TTATGACACC AGAACATACT GCAGACAAAG TTTGATAGGA GGAAACTATG GTTTACTGAA
TACTAGTACT TTCATGCCAA ATCCAGACTA TTACAGTGCA CTTCTTTGGC ACCGACTCAT GGGACAGCGT GTCCTTTTAA
CCACCTTCTA TGGTACAAAG AAGATAAGAA CTTATGCACA CTGTGCAAAG GAATCCAAAG GGGTGACAAT ATTAGTGCTC
AACTTGGATA GCAGCACCAC AGTTGAAGTG AACGTGGACT TAAAATTTAA CAAGTTACCT CGCAGTGGAG TGCATGAACC
AGCGAGAAGA GAGTACCATT TAACAGCACC AGAGAGGAAT TTACATAGCC AAATCATGTT GCTAAATGGA AAAATTTTAA
GTGTAAACTC AGCTGGTGAA ATTCCTCCTT TGGAGCCTAT ATATGTAGAC TCAACAAAGC CAATAACAGT TGGCCCTCTA
TCTATTGTAT TTGCTCATAT ACCAAATGTT ATTCTTGCAG CATGCAGCTA GCTTAGTGGC ACTAGGTGAA TCCGAAAATT
GGTTTCACTT GGTGATTCGT AAAATAAGAG ATAGAATACA TGAAAATTGT GTTTAAGCTT ATTATTGGTG ATAGTTTTAT
CTTCTGTTCT CCTAATGGGG CCTACACAAA TTTGACTACT TGTTTGTTTT CTAATGCCT

>Vigan.01G425500.01
ATGGGTTGTC TGATAAGGCT TCTGGGTCTG TGTCTATGGA TGTACTTGGC AAGCTTAAGC TTCATTTCAG TGGGTGCTAT
GTGTGCAAGA GTGGGAGAAG TTGAGAAAGG GATTGTTTTA GTTCATGGGA AATGTGCTAT TGGAAGGATT GATGATGATT
TTGTGTGTGC AACTCTGGAT TGGTGGCCTC CTCAGAAATG TGACTATGGA AAATGTAGTT GGGGGCATGC TTCTCTGCTT
AATCTGGATC TCAACAACAA AATTTTGTTA AATGCAGTAA AAGCCTTTTC ATCTATGAAA ATTAGAGTAG GTGGCACTTT
GCAAGACAAG GTCATATACG GAACTGAAGA TAATCGAGAA CCCTGTACTC CTTTTGTTTT GAATGCTAAT GAAATGTTTG
GTTTCACTCG AGGGTGCTTA CCGATGAAGA GGTGGGATGA GCTAAACAGC TTTTTCCAGA AAGCAGGGGC TAAGGTTATC
TTTGGATTAA ATGAGCTTGC TGGAAAATCT ATAAAGTCTG GTTTTGCTGT TGGACCTTGG AACTACACCA ATGCTGAATC
TTTAATACGA TACACTGTCA GAAAGAAGTA CCACATTCAT GGTTGGGAAC TTGGGAATGA ATTGTGTGGA CATGGAATTG
GGGTAAGTGT TGCAGCAGAT CAATATGCTT CTGATGTTGC TTCTCTAAGA AAGATAGTTC AAAATGAATA TAGAGGGATT
GAACCAAAGC CACTAGTTAT TGCTCCTGGA GGCTTCTTTG ACGCAGATTG GTTTAAGGAA TTTATAAGCA AGTCTGGTAA
ATCTGCAGAT GTGGTCACCC ACCACATTTA TAATCTTGGG CCAGGAGTTG ATGACCACTT AATTGAAAGC ATTCTTAACC
CTTCCCGTCT GGATGGAGAG GCTGACACTT TCAGAAGTCT CAAAGGTATA CTTCAAAATT CAACAAACAA GGCAAAATCA
TGGGTTGGTG AGGCAGGAGG GGCCTATAAT AGTGGACATC ATCTTGTGTC TGATGCATTT GTCTACAGTT TCTGGTATTT
AGACCAGCTT GGCATGTCAG CTGTTTATGA CACCAGAACA TACTGCAGAC AAAGTTTGAT AGGAGGAAAC TATGGTTTAC
TGAATACTAG TACTTTCATG CCAAATCCAG ACTATTACAG TGCACTTCTT TGGCACCGAC TCATGGGACA GCGTGTCCTT
TTAACCACCT TCTATGGTAC AAAGAAGATA AGAACTTATG CACACTGTGC AAAGGAATCC AAAGGGGTGA CAATATTAGT
GCTCAACTTG GATAGCAGCA CCACAGTTGA AGTGAACGTG GACTTAAAAT TTAACAAGTT ACCTCGCAGT GGAGTGCATG
AACCAGCGAG AAGAGAGTAC CATTTAACAG CACCAGAGAG GAATTTACAT AGCCAAATCA TGTTGCTAAA TGGAAAAATT
TTAAGTGTAA ACTCAGCTGG TGAAATTCCT CCTTTGGAGC CTATATATGT AGACTCAACA AAGCCAATAA CAGTTGGCCC
TCTATCTATT GTATTTGCTC ATATACCAAA TGTTATTCTT GCAGCATGCA GCTAG

>Vigan.01G425500.01
MGCLIRLLGL CLWMYLASLS FISVGAMCAR VGEVEKGIVL VHGKCAIGRI DDDFVCATLD WWPPQKCDYG KCSWGHASLL
NLDLNNKILL NAVKAFSSMK IRVGGTLQDK VIYGTEDNRE PCTPFVLNAN EMFGFTRGCL PMKRWDELNS FFQKAGAKVI
FGLNELAGKS IKSGFAVGPW NYTNAESLIR YTVRKKYHIH GWELGNELCG HGIGVSVAAD QYASDVASLR KIVQNEYRGI
EPKPLVIAPG GFFDADWFKE FISKSGKSAD VVTHHIYNLG PGVDDHLIES ILNPSRLDGE ADTFRSLKGI LQNSTNKAKS
WVGEAGGAYN SGHHLVSDAF VYSFWYLDQL GMSAVYDTRT YCRQSLIGGN YGLLNTSTFM PNPDYYSALL WHRLMGQRVL
LTTFYGTKKI RTYAHCAKES KGVTILVLNL DSSTTVEVNV DLKFNKLPRS GVHEPARREY HLTAPERNLH SQIMLLNGKI
LSVNSAGEIP PLEPIYVDST KPITVGPLSI VFAHIPNVIL AACS*