GBrowse Details

Vigan.01G425700.01

Basic Information:
Name: Vigan.01G425700.01
Multiple alignment
Variant Information
Position: Chr01:55952067..55954199 (+ strand)
Length: 2133
Functional Information:
Description: Similar to Flavonol synthase/flavanone 3-hydroxylase. [G7JGK5, Medicago truncatula]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.14,6.71,11.60,3.27,47.05,30.15,19.60,8.99
Automatic updates:
Name: NM_001255174 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max codeine O-demethylase-like (LOC100793145), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:55952067..55952267 (+ strand)
Length: 201
Type: five_prime_UTR
Position: Chr01:55952268..55952462 (+ strand)
Length: 195
Type: CDS
Position: Chr01:55952849..55953096 (+ strand)
Length: 248
Type: CDS
Position: Chr01:55953271..55953598 (+ strand)
Length: 328
Type: CDS
Position: Chr01:55953770..55954021 (+ strand)
Length: 252
Type: CDS
Position: Chr01:55954022..55954199 (+ strand)
Length: 178
Type: three_prime_UTR


>Vigan.01G425700.01
AAACAAAGTT ACAGCTCATG TTCTTGTCAG AGCCATTGGA CTTAACTGCA GATTTTGTTG CGTATTACAC TAAACAAATC
AGTTTGTAGC TTTCAGACAT AAACAAATAA TCGAAAGTCG GTCTCCCAAA GAAAGCCATC CATTGGTGGA TCACCAACTG
AGAAAGACAT CGCTGACAAT CTACTAGTTT CGGAGAAATC GATGGCCAAG AGCGTTCAAC AAATGTCCAT GGGAGGTGAT
GAACCACCAT CGCAATATAT TGTTAAAGGA AATAGCTTTG TATCTAAAGA TTCTTCCGCA CTCATTCCAA TACCCATCAT
TGATCTAAGT CTCCTCTCAT CAGAAGGTGA GCTACAGAAG CTCAGATCTG CTCTAACTTC AGCTGGATGC TTCCAGGCAA
TTGGTCATGG AATGTCAAGT TCATACCTTG ACAAAATTCG TGAACTTGCA AAACAATTTT TTGCACTCCC AGAAGAGGAA
AAGCAGAAGT ATGCTCGAGC TGTTAATGAA TCTGAAGGGT ATGGGAATGA TAGAGTAGTT TCGGACAAGC AGGTTCTTGA
CTGGTCCTAT CGCCTATCAC TTCGAATTTT TCCAGAAAAA AATCGAAGAC TTTCTCTTTG GCCCAAAATT CCTTCTGATT
TTAGTGAGAA ATTAGAGGAG TTTTCGGCGA AAGTGAAATC AATGATGGAT TATCTCTTGA GATCCATGGC AAGGTCACTG
AATTTGGAAG AGGGTAGCTT CCTGGACCAG TTTGGTGAAG AATCATTGAT GCTGGCGAGG TTCAACTTCT ATCCACGATG
TTCTAGGCCT GATCTGGTCC TTGGCGTCAA ACCTCACACA GATCGATCAG GAATCACAGT TCTATTGCAA GACAAAGAAG
TGGAAGGTCT TCAAGTTCTG ATAGATGACA ATTGGGTCAG TGTTCCCACA ATGCCCGATG CCTTTGTTGT CAATCTGGGC
GATCAAATGC AGATCATGAG TAATGGAATA TTCAAGAGCA TAATGCACAG GGTTGTGACA AACACAGAAA ATATGAGGAT
GTCTTTGGCA ATGTTCAATG AGCCAGATCC TGAGAAGGAG ATTCGACCTG TAGAGGGTCT TATAGATGAG TCGCGGCCTA
GGTTATACAG AAACGTTAAA TGCTATGGTG ACATCAACTA CCAGTGCTAT CAAGAGGGAA AGATTGCACT TGAGACTGTC
AAAATTGAAG ATAACTCTGA CTAGAGGTGT TGAGATTTTC CAACAGCTTG GAAAAGTCTT TGATGTTTTT GTAATTTAAA
TCAAACTAAA AAAGAAAAAT ATGTATGGTT CAGTTGCTTT GAAACCTTAA CTAGTAATAT TGCCTCGTTT TATAGCAATT
CTTGAAAATG GTAGCAGAAA CAGCTAGGTT ATATCCATAA GA

>Vigan.01G425700.01
ATGGCCAAGA GCGTTCAACA AATGTCCATG GGAGGTGATG AACCACCATC GCAATATATT GTTAAAGGAA ATAGCTTTGT
ATCTAAAGAT TCTTCCGCAC TCATTCCAAT ACCCATCATT GATCTAAGTC TCCTCTCATC AGAAGGTGAG CTACAGAAGC
TCAGATCTGC TCTAACTTCA GCTGGATGCT TCCAGGCAAT TGGTCATGGA ATGTCAAGTT CATACCTTGA CAAAATTCGT
GAACTTGCAA AACAATTTTT TGCACTCCCA GAAGAGGAAA AGCAGAAGTA TGCTCGAGCT GTTAATGAAT CTGAAGGGTA
TGGGAATGAT AGAGTAGTTT CGGACAAGCA GGTTCTTGAC TGGTCCTATC GCCTATCACT TCGAATTTTT CCAGAAAAAA
ATCGAAGACT TTCTCTTTGG CCCAAAATTC CTTCTGATTT TAGTGAGAAA TTAGAGGAGT TTTCGGCGAA AGTGAAATCA
ATGATGGATT ATCTCTTGAG ATCCATGGCA AGGTCACTGA ATTTGGAAGA GGGTAGCTTC CTGGACCAGT TTGGTGAAGA
ATCATTGATG CTGGCGAGGT TCAACTTCTA TCCACGATGT TCTAGGCCTG ATCTGGTCCT TGGCGTCAAA CCTCACACAG
ATCGATCAGG AATCACAGTT CTATTGCAAG ACAAAGAAGT GGAAGGTCTT CAAGTTCTGA TAGATGACAA TTGGGTCAGT
GTTCCCACAA TGCCCGATGC CTTTGTTGTC AATCTGGGCG ATCAAATGCA GATCATGAGT AATGGAATAT TCAAGAGCAT
AATGCACAGG GTTGTGACAA ACACAGAAAA TATGAGGATG TCTTTGGCAA TGTTCAATGA GCCAGATCCT GAGAAGGAGA
TTCGACCTGT AGAGGGTCTT ATAGATGAGT CGCGGCCTAG GTTATACAGA AACGTTAAAT GCTATGGTGA CATCAACTAC
CAGTGCTATC AAGAGGGAAA GATTGCACTT GAGACTGTCA AAATTGAAGA TAACTCTGAC TAG

>Vigan.01G425700.01
MAKSVQQMSM GGDEPPSQYI VKGNSFVSKD SSALIPIPII DLSLLSSEGE LQKLRSALTS AGCFQAIGHG MSSSYLDKIR
ELAKQFFALP EEEKQKYARA VNESEGYGND RVVSDKQVLD WSYRLSLRIF PEKNRRLSLW PKIPSDFSEK LEEFSAKVKS
MMDYLLRSMA RSLNLEEGSF LDQFGEESLM LARFNFYPRC SRPDLVLGVK PHTDRSGITV LLQDKEVEGL QVLIDDNWVS
VPTMPDAFVV NLGDQMQIMS NGIFKSIMHR VVTNTENMRM SLAMFNEPDP EKEIRPVEGL IDESRPRLYR NVKCYGDINY
QCYQEGKIAL ETVKIEDNSD *