GBrowse Details

Vigan.01G438200.01

Basic Information:
Name: Vigan.01G438200.01
Multiple alignment
Variant Information
Position: Chr01:57081593..57086283 (+ strand)
Length: 4691
Functional Information:
Description: Similar to deSI-like protein At4g17486-like isoform X3. [XP_004508533.1, Cicer arietinum]
InterPro: PPPDE putative peptidase domain (IPR008580)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.81,2.02,11.53,9.47,12.88,7.05,15.90,13.74
Automatic updates:
Name: NM_001254456 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0326 protein At4g17486-like (LOC100778961), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57081593..57081955 (+ strand)
Length: 363
Type: five_prime_UTR
Position: Chr01:57081956..57082121 (+ strand)
Length: 166
Type: CDS
Position: Chr01:57084620..57084907 (+ strand)
Length: 288
Type: CDS
Position: Chr01:57085475..57085555 (+ strand)
Length: 81
Type: CDS
Position: Chr01:57085684..57085823 (+ strand)
Length: 140
Type: CDS
Position: Chr01:57085824..57086283 (+ strand)
Length: 460
Type: three_prime_UTR


>Vigan.01G438200.01
CTGGTCTTGT GCAGAGCAAC AGACAGGGAA TAAAATTGAG AAAAAGGGAA GGGTGGAACT CGACAGAGAA AAAAAAAGGA
GTTGTCTCAA CCCAACAATA GCAGAGAGAG CCAAACACGT CTTTTGACTA AAAAGTAACT AACCGCTTAT CTCAATCAAC
TCGAAGTCTA ATGTTTTCAT AAGATTGGTT GCTTCAGCGT GGTATGTCGT GGACATGGAT CTGTGTTGTG TGATTTCTTC
TTCTCGCTCC ATGTCCATGG AATGAGTGTT TCCATTTGTA ACTACTTTCC TCTTTTGGTA ATTTCGATTG TAAGGTTGTC
CTGTTTGTGC TGGGTTCGGT AATTTTCAGA TTGCTGCTAC AATATGGGTG TGGAGAATGC CTCGAAGTCC ATTTCCACCT
CACAATGCGA TGACCAACTT AGTAACAGCA AAATCAACAC ACTCGTGCGA TTGAATGTCT ACGATCTCAC CCCTGTCAAT
AATTACGTCT ACTGGGTTGG ATTTGGCATA TTTCATTCTG GCGTTGAAGT GCATGGTAAG GAGTATGGTT TTGGAGCCCA
TGATTTCCCA GCTAGTGGAG TTTTTGAAGT GGAGCCAAGG AAGTGCCCTG GATTCATATA TAGATGTTCC ATCACTTTGG
GTCAAACTAA TATGAGTGCT TCTGACTTTC GTACATTTAT TGAAAACATG GCTTCTGAGT ATCATGGAGA TACCTATCAC
CTTATAACTA AGAACTGCAA TCATTTTACA GAAGATCTCT CCAATAGATT GACTGGGAAA CAAATCCCAG GTTGGGTGAA
TCGGCTTGCT AAGCTAGGTG CTTTATGCAG TTGTCTACTT CCTGAAAGTC TTCAAGTAAC AAGTGTTAAA CAGCTACCTG
AATACCATGA ATGCTCAGAA GATGAATTTG TTGAATCTCT TTCACCTGCC ACACCCCGCG AGTCCACAGA AATAGATGAG
GAGCAAGAAA AGCACCTTCT TTCATCATCA ACTGTAACTG AGGATGTTAC TTTCGTTAGA GAAAGCCAAG CAAAATAATT
GGTATCTTTG ACGTTAGAAG TTACACTTCG CTTTGAAATT TATCCATTTG TTTGCAGTGA TTATTTTTTC TAAATTTTCT
CAATCATCCA TGGGTTTGGG TTCATTGAAA CTGGAGAATC CAGTATTTGT TGTGTACAAA AGATTTTCGA ACGGGGCCTA
TTTGTTTGAT TTTTTTTTTA GGGGTGGAAA GTGGGGCGAG GTTTGAGGCT TAATATTTTG TCATGTTTGA AACTGTCTGT
AAGCTATGGA ATATTAGTCA TTTTGTTTGA CAACATGGTA CAAAAAACAT CTTCCAGTTG GAGGATGAGG GTTTAATGTT
GTTTTTCTTA TGAGGTTCAT ATCCTGCACA AAAAGTAAAA GATGAAATGA CCACTGTAAG CATGGTTGAA TAAAAATGCC
GTGCGCTTTC GACATGATTG ACATGATCTA ATGTGATAGA AATACTTATT GTGATTTA

>Vigan.01G438200.01
ATGGGTGTGG AGAATGCCTC GAAGTCCATT TCCACCTCAC AATGCGATGA CCAACTTAGT AACAGCAAAA TCAACACACT
CGTGCGATTG AATGTCTACG ATCTCACCCC TGTCAATAAT TACGTCTACT GGGTTGGATT TGGCATATTT CATTCTGGCG
TTGAAGTGCA TGGTAAGGAG TATGGTTTTG GAGCCCATGA TTTCCCAGCT AGTGGAGTTT TTGAAGTGGA GCCAAGGAAG
TGCCCTGGAT TCATATATAG ATGTTCCATC ACTTTGGGTC AAACTAATAT GAGTGCTTCT GACTTTCGTA CATTTATTGA
AAACATGGCT TCTGAGTATC ATGGAGATAC CTATCACCTT ATAACTAAGA ACTGCAATCA TTTTACAGAA GATCTCTCCA
ATAGATTGAC TGGGAAACAA ATCCCAGGTT GGGTGAATCG GCTTGCTAAG CTAGGTGCTT TATGCAGTTG TCTACTTCCT
GAAAGTCTTC AAGTAACAAG TGTTAAACAG CTACCTGAAT ACCATGAATG CTCAGAAGAT GAATTTGTTG AATCTCTTTC
ACCTGCCACA CCCCGCGAGT CCACAGAAAT AGATGAGGAG CAAGAAAAGC ACCTTCTTTC ATCATCAACT GTAACTGAGG
ATGTTACTTT CGTTAGAGAA AGCCAAGCAA AATAA

>Vigan.01G438200.01
MGVENASKSI STSQCDDQLS NSKINTLVRL NVYDLTPVNN YVYWVGFGIF HSGVEVHGKE YGFGAHDFPA SGVFEVEPRK
CPGFIYRCSI TLGQTNMSAS DFRTFIENMA SEYHGDTYHL ITKNCNHFTE DLSNRLTGKQ IPGWVNRLAK LGALCSCLLP
ESLQVTSVKQ LPEYHECSED EFVESLSPAT PRESTEIDEE QEKHLLSSST VTEDVTFVRE SQAK*