GBrowse Details

Vigan.01G447000.01

Basic Information:
Name: Vigan.01G447000.01
Multiple alignment
Variant Information
Position: Chr01:57846604..57848974 (- strand)
Length: 2371
Functional Information:
Description: Similar to Minichromosome instability 12-like, putative. [XP_007037731.1, Theobroma cacao]
GO: Biological Process: cell cycle (GO:0007049)
Biological Process: mitosis (GO:0007067)
Cellular Component: chromosome, centromeric region (GO:0000775)
Cellular Component: nucleus (GO:0005634)
InterPro: Centromere protein Mis12 (IPR008685)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.65,3.60,1.25,7.23,4.46,9.61,3.15
Arabidopsis thaliana homolog: AT5G35520.1
Automatic updates:
Name: NM_001249193 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306256 (LOC100306256), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57846604..57846792 (- strand)
Length: 189
Type: three_prime_UTR
Position: Chr01:57846793..57846854 (- strand)
Length: 62
Type: CDS
Position: Chr01:57846948..57847085 (- strand)
Length: 138
Type: CDS
Position: Chr01:57847761..57847890 (- strand)
Length: 130
Type: CDS
Position: Chr01:57847976..57848068 (- strand)
Length: 93
Type: CDS
Position: Chr01:57848447..57848566 (- strand)
Length: 120
Type: CDS
Position: Chr01:57848648..57848705 (- strand)
Length: 58
Type: CDS
Position: Chr01:57848786..57848925 (- strand)
Length: 140
Type: CDS
Position: Chr01:57848926..57848974 (- strand)
Length: 49
Type: five_prime_UTR

>Vigan.01G447000.01 class=Sequence position=Chr01:57846604..57848974 (- strand)
GCAAGGGTGA GAGACTAGTT GAAGTAGCAA AGAGTTTTTT GAAAGAGAAA TGGGGAATTT GGCGGGAATG GAAGGGAGTG
AGAGTGAAGC GGTGTTTGAT GCTCTCAATC TGAACCCACA ACTCTTCTGT AACGAAGTTC TTAACAACGT CGACGATGTT
CTCGATGAAG CTTTCGATTT TTTCTATCAG TAACACTCTT TTCCTTTTTT TTCTATTACT TTTTTGAAAT ACAATTCTGG
AAATTATGCA AGGTGAGCTT CAATTGCAGG GACGCATCCA CGAAGTTGAA CATCGAAGGC ACCCAAAAGT CCCAAGATCT
GAAAAGGGTC TCTCTCTCTT TCTCTTATTG CGTTGGATTC AAAAATTAGG GTAATGGATC TTATTGTGTT ACTGTTGTGT
TGTGAAAGGG TGTTGATTGC ATTCGTCAGA GGGTTCAATC TGTTTTGGAC AAACAGCTTG GTGCTTGGGA GAATTACATC
ATCCGTCACT GTTTTTCTCT CCCCCGAGGT TTTCGTTTGC CAAACACGGT ATCTTCTGCT GCAATTACTG TTTTTAAGCA
TTCTTTTTTA ACTCAAGTTA AGTATTAACT CATTTTTTAT TTGCGCGTAT TGGCCTTTAT AACATTAGTT GTTTTTATAA
CATTAGTTGT TTCGCAATAC ACCGTGATGA AATTTGTGTC AGATTTGGAT TGATTTGGTG CAAGAACAGT GTACCTCTGA
TTCAGTTGTC TAGTATTTCG TTGTTAATGT TATATGGTGG ATGTGTCCTT TGAAGTGCAT ACCAGAAAAC CTGACATCTA
AACCCTAAGT CATACGTAGA AAATATATGT GCTAGTTTAT TGCTTCCTTA GTATAAATTT TCATTCTTGG TTGATTGTCT
GACCATGATA GAATGTGTAC TTCCAGGATG AATCAACTGA GAGTGGTCAT GATCCAGGTG CTCCTTTTGA TCCAGATATA
GATGCTCAGT TAGATTCTTT GAGAGAAAAA TTAACTGAGG TAATGAGAAT GGTGATTGCT AAATTCTTTC TTTTTTCAGA
ATTGATTATT GTTGGATTTG TCTTGGTAAT GATTATGCTG TCAGGTGGCG AAGGATTCTG AAATGCTTAA TCAAGAAGTT
CAACTATTAG AAAGAAAGTC TACTGTCAAT GCTGGATATA TCAATGAAGC AGTACAGTTA TATGAGCAAA ACTCTATGAA
TGAGTTGTTT CAGGGTAATT AAAGAGCTCC TTGTCTTTTT GCTCATATCT TGACCATCGG TATTCACAAT TCAATCCCGC
TGAACTATTT TTTATAGCAA AATTATGCTT TCCATTTTAA TCAAGCAGGT GATACTCCAT TTCTAAACGG CATCTGTTTC
AACACCTGCA TATTGCTTTT GATTTGCAGT TAGTGAACTA CAAGAACATT GAATTCTTAG GTCATGTACA ATTCAGATAG
AACGTGATTT AATTATTATG AAAATCCCTT TTACGGATCC TCAGAAACGG CATTTCCCAT CATTTATTCT TTTTTCTTTT
ACAGTTGCAT ACCTTGGTCA TTTTATTAAA TGGTGTACGT TCATGATCGT ATTGGTCATT TTATTCTGAT TTTTTTTATA
CGTCGTTTTT TATCTGATAG GAATTTGACA AAACAGTTGT AAGAAGGGTT ACTTTAGTTC TTTGTACTTA AAAACCACAC
CAATTATTTA GGGGCACCAT CATTGGTGCC TATGGATTGG GATGTTAAGG TCCTGCCAAA TAATGCTAAC AACATTTTCC
GGTGTCCTAT ATTGTTCTCA TATGATGGCA AAAAAAATGC AATTTCTGGT TGAATTATTG TCAAACATAG TTGAATCATA
TTAAGCGTCT GAGTTGACAG ATCTTTATAC AAACCATTGA TTGCTGCAGA GATTGTGACC ACTGCCTCAG AACTTGGAAT
GAAGTTGGGA AAGCTAAACT CCAGCATGAT TGAAGAGACT GACCAAATGA AAACAAAAAG GATCTATAGC ACAGAAATGG
ATCTATCTGC TGTACATTCT GCTAAAGGTA GCCAAAATTT AATTCATTGT AGTGCAACAT GCATCAACTT TTGCTAGTTA
AACTCTATTC TGTTCTTTAA TTGATTATTC ATGTTTCCAG GACTCTCAAA TAAGAACTTA GACGACATTG AAGAATTTGT
AGGTATCATG AAGAGTATGT GAACTTGTCA TTTTCATCAA TCTAGTTGGG CTGGACGCTG CGTGTTTTAC CCACTATATA
ATTACTCCTG TATATGTGTC AATTTCAGAA TCTTAAAATT ACCTACAAAT TTAATTGGAC TGAATTTCCC GTAGTTATAT
ACTATATATG TGTTGAAAAT GTTAAGTGGT AACTAAATAA GTTTGAGAAG C

>Vigan.01G447000.01
GCAAGGGTGA GAGACTAGTT GAAGTAGCAA AGAGTTTTTT GAAAGAGAAA TGGGGAATTT GGCGGGAATG GAAGGGAGTG
AGAGTGAAGC GGTGTTTGAT GCTCTCAATC TGAACCCACA ACTCTTCTGT AACGAAGTTC TTAACAACGT CGACGATGTT
CTCGATGAAG CTTTCGATTT TTTCTATCAG GACGCATCCA CGAAGTTGAA CATCGAAGGC ACCCAAAAGT CCCAAGATCT
GAAAAGGGGT GTTGATTGCA TTCGTCAGAG GGTTCAATCT GTTTTGGACA AACAGCTTGG TGCTTGGGAG AATTACATCA
TCCGTCACTG TTTTTCTCTC CCCCGAGGTT TTCGTTTGCC AAACACGGAT GAATCAACTG AGAGTGGTCA TGATCCAGGT
GCTCCTTTTG ATCCAGATAT AGATGCTCAG TTAGATTCTT TGAGAGAAAA ATTAACTGAG GTGGCGAAGG ATTCTGAAAT
GCTTAATCAA GAAGTTCAAC TATTAGAAAG AAAGTCTACT GTCAATGCTG GATATATCAA TGAAGCAGTA CAGTTATATG
AGCAAAACTC TATGAATGAG TTGTTTCAGG AGATTGTGAC CACTGCCTCA GAACTTGGAA TGAAGTTGGG AAAGCTAAAC
TCCAGCATGA TTGAAGAGAC TGACCAAATG AAAACAAAAA GGATCTATAG CACAGAAATG GATCTATCTG CTGTACATTC
TGCTAAAGGA CTCTCAAATA AGAACTTAGA CGACATTGAA GAATTTGTAG GTATCATGAA GAGTATGTGA ACTTGTCATT
TTCATCAATC TAGTTGGGCT GGACGCTGCG TGTTTTACCC ACTATATAAT TACTCCTGTA TATGTGTCAA TTTCAGAATC
TTAAAATTAC CTACAAATTT AATTGGACTG AATTTCCCGT AGTTATATAC TATATATGTG TTGAAAATGT TAAGTGGTAA
CTAAATAAGT TTGAGAAGC

>Vigan.01G447000.01
ATGGGGAATT TGGCGGGAAT GGAAGGGAGT GAGAGTGAAG CGGTGTTTGA TGCTCTCAAT CTGAACCCAC AACTCTTCTG
TAACGAAGTT CTTAACAACG TCGACGATGT TCTCGATGAA GCTTTCGATT TTTTCTATCA GGACGCATCC ACGAAGTTGA
ACATCGAAGG CACCCAAAAG TCCCAAGATC TGAAAAGGGG TGTTGATTGC ATTCGTCAGA GGGTTCAATC TGTTTTGGAC
AAACAGCTTG GTGCTTGGGA GAATTACATC ATCCGTCACT GTTTTTCTCT CCCCCGAGGT TTTCGTTTGC CAAACACGGA
TGAATCAACT GAGAGTGGTC ATGATCCAGG TGCTCCTTTT GATCCAGATA TAGATGCTCA GTTAGATTCT TTGAGAGAAA
AATTAACTGA GGTGGCGAAG GATTCTGAAA TGCTTAATCA AGAAGTTCAA CTATTAGAAA GAAAGTCTAC TGTCAATGCT
GGATATATCA ATGAAGCAGT ACAGTTATAT GAGCAAAACT CTATGAATGA GTTGTTTCAG GAGATTGTGA CCACTGCCTC
AGAACTTGGA ATGAAGTTGG GAAAGCTAAA CTCCAGCATG ATTGAAGAGA CTGACCAAAT GAAAACAAAA AGGATCTATA
GCACAGAAAT GGATCTATCT GCTGTACATT CTGCTAAAGG ACTCTCAAAT AAGAACTTAG ACGACATTGA AGAATTTGTA
GGTATCATGA AGAGTATGTG A

>Vigan.01G447000.01
MGNLAGMEGS ESEAVFDALN LNPQLFCNEV LNNVDDVLDE AFDFFYQDAS TKLNIEGTQK SQDLKRGVDC IRQRVQSVLD
KQLGAWENYI IRHCFSLPRG FRLPNTDEST ESGHDPGAPF DPDIDAQLDS LREKLTEVAK DSEMLNQEVQ LLERKSTVNA
GYINEAVQLY EQNSMNELFQ EIVTTASELG MKLGKLNSSM IEETDQMKTK RIYSTEMDLS AVHSAKGLSN KNLDDIEEFV
GIMKSM*