GBrowse Details

Vigan.01G447000.01

Basic Information:
Name: Vigan.01G447000.01
Multiple alignment
Variant Information
Position: Chr01:57846604..57848974 (- strand)
Length: 2371
Functional Information:
Description: Similar to Minichromosome instability 12-like, putative. [XP_007037731.1, Theobroma cacao]
GO: Biological Process: cell cycle (GO:0007049)
Biological Process: mitosis (GO:0007067)
Cellular Component: chromosome, centromeric region (GO:0000775)
Cellular Component: nucleus (GO:0005634)
InterPro: Centromere protein Mis12 (IPR008685)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.65,3.60,1.25,7.23,4.46,9.61,3.15
Arabidopsis thaliana homolog: AT5G35520.1
Automatic updates:
Name: NM_001249193 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306256 (LOC100306256), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57846604..57846792 (- strand)
Length: 189
Type: three_prime_UTR
Position: Chr01:57846793..57846854 (- strand)
Length: 62
Type: CDS
Position: Chr01:57846948..57847085 (- strand)
Length: 138
Type: CDS
Position: Chr01:57847761..57847890 (- strand)
Length: 130
Type: CDS
Position: Chr01:57847976..57848068 (- strand)
Length: 93
Type: CDS
Position: Chr01:57848447..57848566 (- strand)
Length: 120
Type: CDS
Position: Chr01:57848648..57848705 (- strand)
Length: 58
Type: CDS
Position: Chr01:57848786..57848925 (- strand)
Length: 140
Type: CDS
Position: Chr01:57848926..57848974 (- strand)
Length: 49
Type: five_prime_UTR


>Vigan.01G447000.01
GCAAGGGTGA GAGACTAGTT GAAGTAGCAA AGAGTTTTTT GAAAGAGAAA TGGGGAATTT GGCGGGAATG GAAGGGAGTG
AGAGTGAAGC GGTGTTTGAT GCTCTCAATC TGAACCCACA ACTCTTCTGT AACGAAGTTC TTAACAACGT CGACGATGTT
CTCGATGAAG CTTTCGATTT TTTCTATCAG GACGCATCCA CGAAGTTGAA CATCGAAGGC ACCCAAAAGT CCCAAGATCT
GAAAAGGGGT GTTGATTGCA TTCGTCAGAG GGTTCAATCT GTTTTGGACA AACAGCTTGG TGCTTGGGAG AATTACATCA
TCCGTCACTG TTTTTCTCTC CCCCGAGGTT TTCGTTTGCC AAACACGGAT GAATCAACTG AGAGTGGTCA TGATCCAGGT
GCTCCTTTTG ATCCAGATAT AGATGCTCAG TTAGATTCTT TGAGAGAAAA ATTAACTGAG GTGGCGAAGG ATTCTGAAAT
GCTTAATCAA GAAGTTCAAC TATTAGAAAG AAAGTCTACT GTCAATGCTG GATATATCAA TGAAGCAGTA CAGTTATATG
AGCAAAACTC TATGAATGAG TTGTTTCAGG AGATTGTGAC CACTGCCTCA GAACTTGGAA TGAAGTTGGG AAAGCTAAAC
TCCAGCATGA TTGAAGAGAC TGACCAAATG AAAACAAAAA GGATCTATAG CACAGAAATG GATCTATCTG CTGTACATTC
TGCTAAAGGA CTCTCAAATA AGAACTTAGA CGACATTGAA GAATTTGTAG GTATCATGAA GAGTATGTGA ACTTGTCATT
TTCATCAATC TAGTTGGGCT GGACGCTGCG TGTTTTACCC ACTATATAAT TACTCCTGTA TATGTGTCAA TTTCAGAATC
TTAAAATTAC CTACAAATTT AATTGGACTG AATTTCCCGT AGTTATATAC TATATATGTG TTGAAAATGT TAAGTGGTAA
CTAAATAAGT TTGAGAAGC

>Vigan.01G447000.01
ATGGGGAATT TGGCGGGAAT GGAAGGGAGT GAGAGTGAAG CGGTGTTTGA TGCTCTCAAT CTGAACCCAC AACTCTTCTG
TAACGAAGTT CTTAACAACG TCGACGATGT TCTCGATGAA GCTTTCGATT TTTTCTATCA GGACGCATCC ACGAAGTTGA
ACATCGAAGG CACCCAAAAG TCCCAAGATC TGAAAAGGGG TGTTGATTGC ATTCGTCAGA GGGTTCAATC TGTTTTGGAC
AAACAGCTTG GTGCTTGGGA GAATTACATC ATCCGTCACT GTTTTTCTCT CCCCCGAGGT TTTCGTTTGC CAAACACGGA
TGAATCAACT GAGAGTGGTC ATGATCCAGG TGCTCCTTTT GATCCAGATA TAGATGCTCA GTTAGATTCT TTGAGAGAAA
AATTAACTGA GGTGGCGAAG GATTCTGAAA TGCTTAATCA AGAAGTTCAA CTATTAGAAA GAAAGTCTAC TGTCAATGCT
GGATATATCA ATGAAGCAGT ACAGTTATAT GAGCAAAACT CTATGAATGA GTTGTTTCAG GAGATTGTGA CCACTGCCTC
AGAACTTGGA ATGAAGTTGG GAAAGCTAAA CTCCAGCATG ATTGAAGAGA CTGACCAAAT GAAAACAAAA AGGATCTATA
GCACAGAAAT GGATCTATCT GCTGTACATT CTGCTAAAGG ACTCTCAAAT AAGAACTTAG ACGACATTGA AGAATTTGTA
GGTATCATGA AGAGTATGTG A

>Vigan.01G447000.01
MGNLAGMEGS ESEAVFDALN LNPQLFCNEV LNNVDDVLDE AFDFFYQDAS TKLNIEGTQK SQDLKRGVDC IRQRVQSVLD
KQLGAWENYI IRHCFSLPRG FRLPNTDEST ESGHDPGAPF DPDIDAQLDS LREKLTEVAK DSEMLNQEVQ LLERKSTVNA
GYINEAVQLY EQNSMNELFQ EIVTTASELG MKLGKLNSSM IEETDQMKTK RIYSTEMDLS AVHSAKGLSN KNLDDIEEFV
GIMKSM*