GBrowse Details

Vigan.01G448700.01

Basic Information:
Name: Vigan.01G448700.01
Multiple alignment
Variant Information
Position: Chr01:57972660..57975633 (+ strand)
Length: 2974
Functional Information:
Description: Similar to Uncharacterized protein. [C6TEH0, Glycine max]
InterPro: Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.08,0.11,44.03,248.09,6.59,18.20,1.34,14.91
Arabidopsis thaliana homolog: AT5G23060.1
Automatic updates:
Name: NM_001252974 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max calcium sensing receptor, chloroplastic-like (CAS), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57972660..57973378 (+ strand)
Length: 719
Type: five_prime_UTR
Position: Chr01:57973379..57973603 (+ strand)
Length: 225
Type: CDS
Position: Chr01:57973702..57973947 (+ strand)
Length: 246
Type: CDS
Position: Chr01:57974419..57974611 (+ strand)
Length: 193
Type: CDS
Position: Chr01:57974746..57974887 (+ strand)
Length: 142
Type: CDS
Position: Chr01:57974972..57975103 (+ strand)
Length: 132
Type: CDS
Position: Chr01:57975187..57975427 (+ strand)
Length: 241
Type: CDS
Position: Chr01:57975428..57975633 (+ strand)
Length: 206
Type: three_prime_UTR


>Vigan.01G448700.01
GTAATAATAT GGGTACAACA AGGCAAAACA CATTTCTCGT AGTCGATACA AAAGTTTACC TTCTGTCTTT GATATTTACC
ATAGTAAACT ACCATCCCGC CTTCATTTTC TTCTAATTTC ACCCTTACAT TTTCTTAGCT TTTTCAAGAA AGTTATGATG
TTTGTACGAG GTATTGTTTC CGTTGTGTAA TAGGATTATG ACTTTTCGAT ACACAGTGAA AACACAACAA AAGCATGTTT
GCAAAACAGC ATTTCATGAA TTATCAAATA CCGATAATAA GTCAAACATG AAATCATACA AAATACACGT AAATCAAATC
ACGTGAGTGG CGAAAATAGT GTAAAGTATT TTTGAACAAC CACCTCGGAC TTGATATGAT TAAACTGGAG TGTTTGAAAG
ACAAATAAGA AAGTAAAGTA AAGAAGTGAG ATGGGACTAA AATCGGGTCT ACCAAACTGT TTGAATTATC GTTCTCCACG
AAAGTTCATG GTATGCCACG TGGAGTGGTG ATAGTTTTGC AGCCTCAAAC ATAGATGGTG CATAGGTGGA CATAAAGAAC
AATTAAACTG TCATGGCTTC ACAATGGATT TTGGCCACAC ATCTCTCATC ACTCTAACCA ACTTTTTTCA TCTATCGTCC
TTCAACCAAT CACTTTCTAA ACTCACTGGC AAAGAATCTT TGAGTAAGGG AGTGAGTGTG TAGAGAGTAG CAATCACCAA
TGGAGATTTC TGCCATGGCT TCTTCAGCTA CTCCAAGACC TTCTCTTCCA ACTCCTTCTT CACACCCAGT AGTCACCACT
TTTACCAAAC CTCAACTCAG ACGCAACCAC ATAGCACTGC CAACCTCATC CACCATTTCG CTCCTCGCTC TCTTCGCCCC
TCCCAACGAA GCCAAAGCCG CTGTCTCCAT CGCCAAGGAT CAGATTGTTT CGTCTCTCAC CCAGGTTGAG AAAACGATTG
ACCAGGTTCA GGAAGTGGGT TCGAATGTTC TGGACACGGC ACAGCGTGTT GCTGAGGTAA TTGGGAACGC TTTGAAACCT
GGTATCGAAA CGGCGTTGCC GATTGTGCAG CAAGCTGGGG AAGAGGCCTT GAAAATTGCT TCCCCTGCCA TTTCTGAAGC
TTCCAAGAAA GCCCAAGAAG CACTGCAAAG CTCTGGTGTT GATACCCAAC CTGTTATCAC TGCTGCTAAG ACAGTGGCAG
ATGCTGCACA ACAAACGACC AAGGTGATTG ATGTTGCCAA GCCAATAGCT TCTTCAACCG TTGAAACCAT ATCCTCTTCA
GACCCTACTG TGATTGCTGG AACTGCAGGA GCACTATTCG TTGCCTACCT CCTGATTCCT CCTATCTGGT CTGTCATCTC
CTCTAATCTT CGTGGTTACA AAGGAGACCT AACTCCTGCT CAAGCCCTTG ATTTGATATC TGCACAAAAC TACGTTTTGA
TTGATATCAG GTCAGAGAAA GATAAGGACA AGACTGGTAT CCCTCGCCTT CCCTCTAGTG CTAAAAACAG GCTGGTTGCC
ATTCCTTTGG AAGAACTGCC AAGTAAGCTC AAAGGGCAGG TGAAGAATGT GAAGAAATTG GAAGCTGAAG TAGTGGCTTT
GAAGATTTCT TATCTGAAGA AAATCAACAA AGGCACCAAC GTTGTGATCC TGGACTCGTA TTCGGACGTA GCAAAAACAG
TGGGAAGAAC ACTGACTAAC CTTGGTTTTA AGAACACATG GATCGTTGCT GATGGATTCT CTGGGAACAA AGGGTGGTTG
CAGAGTAGAT TAGGAACAGA TTCTTATAAC TTTTCGTTCG CAGAGGTGCT GTCACCATCC AGGATCATCC CTGCATCTGT
GAGAGCTTTT GGCACAACTA GCCAATCCAG CACTAAGCTT CTTCCTGGGG CTGACTAACT TTTTGTGCAC TAAACTCTTG
CTAATAGAAA TCACTCTTCT TCATGCTTCA CTCATCCTAT ATATTTATTA ATTATTTCCC ATAATTATTT CATCAATTTT
GTCAACCATG TTATTTCAAC CCTTTACCTT TATACAAGTT TTGAGTGCCT GCATTGCATC CCTTAGTTGC ACATATTAGT
TTTGGAATTC CAAGTGTCAA TCTA

>Vigan.01G448700.01
ATGGAGATTT CTGCCATGGC TTCTTCAGCT ACTCCAAGAC CTTCTCTTCC AACTCCTTCT TCACACCCAG TAGTCACCAC
TTTTACCAAA CCTCAACTCA GACGCAACCA CATAGCACTG CCAACCTCAT CCACCATTTC GCTCCTCGCT CTCTTCGCCC
CTCCCAACGA AGCCAAAGCC GCTGTCTCCA TCGCCAAGGA TCAGATTGTT TCGTCTCTCA CCCAGGTTGA GAAAACGATT
GACCAGGTTC AGGAAGTGGG TTCGAATGTT CTGGACACGG CACAGCGTGT TGCTGAGGTA ATTGGGAACG CTTTGAAACC
TGGTATCGAA ACGGCGTTGC CGATTGTGCA GCAAGCTGGG GAAGAGGCCT TGAAAATTGC TTCCCCTGCC ATTTCTGAAG
CTTCCAAGAA AGCCCAAGAA GCACTGCAAA GCTCTGGTGT TGATACCCAA CCTGTTATCA CTGCTGCTAA GACAGTGGCA
GATGCTGCAC AACAAACGAC CAAGGTGATT GATGTTGCCA AGCCAATAGC TTCTTCAACC GTTGAAACCA TATCCTCTTC
AGACCCTACT GTGATTGCTG GAACTGCAGG AGCACTATTC GTTGCCTACC TCCTGATTCC TCCTATCTGG TCTGTCATCT
CCTCTAATCT TCGTGGTTAC AAAGGAGACC TAACTCCTGC TCAAGCCCTT GATTTGATAT CTGCACAAAA CTACGTTTTG
ATTGATATCA GGTCAGAGAA AGATAAGGAC AAGACTGGTA TCCCTCGCCT TCCCTCTAGT GCTAAAAACA GGCTGGTTGC
CATTCCTTTG GAAGAACTGC CAAGTAAGCT CAAAGGGCAG GTGAAGAATG TGAAGAAATT GGAAGCTGAA GTAGTGGCTT
TGAAGATTTC TTATCTGAAG AAAATCAACA AAGGCACCAA CGTTGTGATC CTGGACTCGT ATTCGGACGT AGCAAAAACA
GTGGGAAGAA CACTGACTAA CCTTGGTTTT AAGAACACAT GGATCGTTGC TGATGGATTC TCTGGGAACA AAGGGTGGTT
GCAGAGTAGA TTAGGAACAG ATTCTTATAA CTTTTCGTTC GCAGAGGTGC TGTCACCATC CAGGATCATC CCTGCATCTG
TGAGAGCTTT TGGCACAACT AGCCAATCCA GCACTAAGCT TCTTCCTGGG GCTGACTAA

>Vigan.01G448700.01
MEISAMASSA TPRPSLPTPS SHPVVTTFTK PQLRRNHIAL PTSSTISLLA LFAPPNEAKA AVSIAKDQIV SSLTQVEKTI
DQVQEVGSNV LDTAQRVAEV IGNALKPGIE TALPIVQQAG EEALKIASPA ISEASKKAQE ALQSSGVDTQ PVITAAKTVA
DAAQQTTKVI DVAKPIASST VETISSSDPT VIAGTAGALF VAYLLIPPIW SVISSNLRGY KGDLTPAQAL DLISAQNYVL
IDIRSEKDKD KTGIPRLPSS AKNRLVAIPL EELPSKLKGQ VKNVKKLEAE VVALKISYLK KINKGTNVVI LDSYSDVAKT
VGRTLTNLGF KNTWIVADGF SGNKGWLQSR LGTDSYNFSF AEVLSPSRII PASVRAFGTT SQSSTKLLPG AD*