GBrowse Details

Vigan.01G448800.01

Basic Information:
Name: Vigan.01G448800.01
Multiple alignment
Variant Information
Position: Chr01:57978495..57982214 (+ strand)
Length: 3720
Functional Information:
Description: Similar to Emb|CAB62636.1. [Q9FN50, Arabidopsis thaliana]
InterPro: Protein of unknown function DUF3353 (IPR021788)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.77,16.37,28.55,61.01,25.89,22.66,19.21,20.36
Arabidopsis thaliana homolog: AT5G23040.1
Automatic updates:
Name: NM_001255642 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cell growth defect factor 1-like protein (LOC100806315), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57978495..57978737 (+ strand)
Length: 243
Type: five_prime_UTR
Position: Chr01:57978738..57978796 (+ strand)
Length: 59
Type: CDS
Position: Chr01:57978945..57979015 (+ strand)
Length: 71
Type: CDS
Position: Chr01:57980175..57980557 (+ strand)
Length: 383
Type: CDS
Position: Chr01:57981647..57981723 (+ strand)
Length: 77
Type: CDS
Position: Chr01:57981820..57981970 (+ strand)
Length: 151
Type: CDS
Position: Chr01:57981971..57982214 (+ strand)
Length: 244
Type: three_prime_UTR


>Vigan.01G448800.01
ACTTAACGTA TCATATTTTA AACAAGATGG TACCCTAGCA GGAAGTGGTT CACAATAGAA GACAAAAGTA ATCAGTTATC
TTCTTACTCT TCTTGTTCTT CTTCTCAGTG CCAGAACCTA AAGAAGAACA CGTTCCATTT CCCCTTTGCT TTTCCAATTT
TCCACCTACC ATGCTATTCA ACTAGGGTTA GGACGTAGGG CGTTCTTAAT TTTTTCGCTC TGTTAATTAC AAAGAAGGCC
GACATGGTTG TGCTTTCGCT CTCAGCTCCC AACCTCTCTA CCGCTTTTCT CGCTAAGAAA TTGTATCTCC GAGAACACGC
GAAGAAGCTT ACGGCCTTTC GCACTAAATG CACGGTGGAC ACGCCCTACG GAGGTAATGT CCAGAAATTC CCTCGAATCA
ATGTTTGGGA TCCTTACCGT CGTCTTGGTA TTAGCCCTGA TGCTTCTGAA GAAGAAATTT GGGGATCAAG AAATTTTTTG
TTGCAACAAT ATGCTGGGCA TGAGAGGAGT GAAGAATCAA TTGAAGCGGC TTTTGAAAAA TTATTGATGG CAAGTTTCAT
ACAGAGGAGG AAAACAAAAA TTAATTTGAA AAGCAAGTTA AAAAAGAAAG TAGAAGAGTC TCCACCATGG GTGAAGAACT
TGCTAAACTT TGTTGAACTT CCACCGCCTG AAATCATCCT CAGAAGATTG TTTCTCTTTG CCTTCATGGG TGGCTGGAGT
ATTATGAATT CCGCCGAAAC TGGACCTGCT TTTCAGGTGG CGATCTCTTT GGCTGCTTGC ATATATTTTC TTAACGAAAA
GACAAAGAGC TTGGGGAGAG CATTCATTAT TGGATTTGGA GCTCTGGTGG CTGGATGGGT ATCTGGTTCA GTGCTGGTAC
CCAATATTCC AGCTGTGTTG CTGCGCCCAA CTTGGACACT TGAACTCCTA ACGTCATTGG TAGTTTATAC ATTCTTGTTC
GTTGCTTGTA CTTTTCTCAA GTGAAGTAGA GCATCAATTC TTTCAACGTT TTATTAGGAG ATGAGTTTAT AGGCGATCGA
GCTGCACTTT TGTTTAGCGA GCTTAAATGT TTACTGTCTT ATACTTTATC AAAACAACTT TCTGAATTGG GAATGGTCAG
CGTAATTATT TCAAAATAAG TTCATCTTAA TCATTATTTT TTTATCTATC ACATATTGCA GCTGTTTAAT AAATATTGAA
ATTGTAATGA TTATTTCCTT TTGAAGTA

>Vigan.01G448800.01
ATGGTTGTGC TTTCGCTCTC AGCTCCCAAC CTCTCTACCG CTTTTCTCGC TAAGAAATTG TATCTCCGAG AACACGCGAA
GAAGCTTACG GCCTTTCGCA CTAAATGCAC GGTGGACACG CCCTACGGAG GTAATGTCCA GAAATTCCCT CGAATCAATG
TTTGGGATCC TTACCGTCGT CTTGGTATTA GCCCTGATGC TTCTGAAGAA GAAATTTGGG GATCAAGAAA TTTTTTGTTG
CAACAATATG CTGGGCATGA GAGGAGTGAA GAATCAATTG AAGCGGCTTT TGAAAAATTA TTGATGGCAA GTTTCATACA
GAGGAGGAAA ACAAAAATTA ATTTGAAAAG CAAGTTAAAA AAGAAAGTAG AAGAGTCTCC ACCATGGGTG AAGAACTTGC
TAAACTTTGT TGAACTTCCA CCGCCTGAAA TCATCCTCAG AAGATTGTTT CTCTTTGCCT TCATGGGTGG CTGGAGTATT
ATGAATTCCG CCGAAACTGG ACCTGCTTTT CAGGTGGCGA TCTCTTTGGC TGCTTGCATA TATTTTCTTA ACGAAAAGAC
AAAGAGCTTG GGGAGAGCAT TCATTATTGG ATTTGGAGCT CTGGTGGCTG GATGGGTATC TGGTTCAGTG CTGGTACCCA
ATATTCCAGC TGTGTTGCTG CGCCCAACTT GGACACTTGA ACTCCTAACG TCATTGGTAG TTTATACATT CTTGTTCGTT
GCTTGTACTT TTCTCAAGTG A

>Vigan.01G448800.01
MVVLSLSAPN LSTAFLAKKL YLREHAKKLT AFRTKCTVDT PYGGNVQKFP RINVWDPYRR LGISPDASEE EIWGSRNFLL
QQYAGHERSE ESIEAAFEKL LMASFIQRRK TKINLKSKLK KKVEESPPWV KNLLNFVELP PPEIILRRLF LFAFMGGWSI
MNSAETGPAF QVAISLAACI YFLNEKTKSL GRAFIIGFGA LVAGWVSGSV LVPNIPAVLL RPTWTLELLT SLVVYTFLFV
ACTFLK*