VIGGS:GBrowse

Vigan.01G449400.01

Basic Information:

Name:	Vigan.01G449400.01 Multiple alignment Variant Information
Position:	Chr01:58036797..58044223 (+ strand)
Length:	7427

Functional Information:

Description:	Similar to Uncharacterized protein. [I1K169, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:39.71,16.85,29.33,21.42,19.47,38.76,24.62,29.56
Arabidopsis thaliana homolog:	AT5G08160.1

Automatic updates:

Name:	BT094941 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-19G23 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:58036797..58037102 (+ strand)
Length:	306
Type:	five_prime_UTR

Position:	Chr01:58037103..58037307 (+ strand)
Length:	205
Type:	CDS

Position:	Chr01:58038045..58038187 (+ strand)
Length:	143
Type:	CDS

Position:	Chr01:58039782..58039925 (+ strand)
Length:	144
Type:	CDS

Position:	Chr01:58040177..58040362 (+ strand)
Length:	186
Type:	CDS

Position:	Chr01:58042538..58042662 (+ strand)
Length:	125
Type:	CDS

Position:	Chr01:58043632..58043857 (+ strand)
Length:	226
Type:	CDS

Position:	Chr01:58043858..58044223 (+ strand)
Length:	366
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G449400.01
GAAAAAAGAA CGGAATGCGT GCCTGAAATA AACGAGACAA GCGTTGGGCT GAGAATGGAG GGATCCAAGA GAGGTGTTGG
CTATTAAGAA AATCTGAAAC CCGGAATAAC ATATAGGAGA GGAGGGTTGA CGCTTGCAAA TTACGAATCT CATTGCTCCC
AACACAAATA ACGTGAAATC AGGTATTCGA AAATCAATTT GGACACCTGA TTTCAGTTCT TTTCTTAATA ATTGTTTCTG
TTGTACACAA ACGCAACGCA ACACCAACAC CCACACGAGC AGGGAGCGAA CAAGAGGGAA AAGAAAATGG GGTGCTCATT
CTCTGGTTTG AACGCGCTGT ACGATTCCGT TAACAGCGGA GGCGATGCGT GGATCAACGA GAATCGTTTC CGCATCGTGC
GCCAGCTCGG AGAAGGTGGC TTCGCCTACG TCTACCTCGT CAAGGAGCTT ATCAACGATT CCGCCGCCGG TGGCCTTGCC
AAGAAGCTCA AAGACTCCTC TCATGTCTCC GAGGATGGGA CTTATGCTAT GAAAAAGGTC CTCATTCAGA ACAATGAACA
GCTGGAGTTG GTCAGGGAGG AGATCCGTGT TTCGTCACTG TTCAATCATC CCAATCTGCT CCCACTTCTT GATCATGCTA
TTATTTCTGT TAAGCCTACC CAAGAAACGT CTTGGAACCA TGAAGCGTAC TTGCTGTTTC CAGTTCATAT GGATGGAACA
TTGCTAGACA ATGCCAAAGT AATGAAAACC AAGAAGGAAT TCTATTCCAC CTCAGATGTT CTTCAAATAT TTCGTCAGCT
TTGTGCAGGA CTCAAGCACA TGCACAGCTT TGATCCTCCT TATGCACATA ATGATGTGAA ACCTGGTAAT GTTCTCATAA
CACACAGAAA AGGACAGCCA CCTCTTGCCA TACTGATGGA TTTTGGCAGT GCTCGTCCTG CAAGGAAGCA AATTACGAAC
AGATCAGAAG CACTCCAGTT ACAGGAATGG GCAGCTGAAC ACTGCTCTGC ACCTTTCCGA GCTCCTGAGC TGTGGGATTG
TCCAAGCCAA GCTTCTATAG ATGAGAGGAC TGACGTTTGG TCACTAGGAT GCACATTATA TGCAATAATG TATGGGGTAT
CTCCATTTGA ATATGCACTG GGAGAGTCTG GTGGAAGCCT GCAATTGGCT ATAGTAAATG CTCAGGTGAA ATGGCCAGCT
GGACCTAAGC CTCCATATCC AGAAGCTTTT CACCAGTTCG TGTCATGGAT GCTTCAGCCC CAGGCTGCTA TGAGGCCCCG
AATAGATGAT ATCATCATCC ATGTGGATAA GTTGATTGCA AAGTTCACCC AATGAGAGAA GGGAAAAGTG GTGCATGAGA
TTACATATTT TGCAGTTATT TAAAGATTTG GTGTGCATTT ACTGTCCGGT TATATGTTAA TGGATAGAAA AGCAACAGCA
GTTCCTCGCC TGACGGAGTT AACCTTATAA TGTATCTTCG TTTTTGGTGT TAGTCTAGGT AGTCACTCCG CCGTTGGCAA
AGTCTTCTTT CTGTCATTTC TACATAATTT TTGTTTTTGT AATCAAATCT CCAATCTCCC CGTGTCTTCA CAACTTATCA
ATAAATATTA TGTATCATTT ATTTATTCAC TTTCTTTCTT TATGTATATT ATATTGTTTA CTATAGTATT TTTTTATAGG
ATAAGTTTTT TTTTTTCAAA A

[show][hide][copy]CDS

>Vigan.01G449400.01
ATGGGGTGCT CATTCTCTGG TTTGAACGCG CTGTACGATT CCGTTAACAG CGGAGGCGAT GCGTGGATCA ACGAGAATCG
TTTCCGCATC GTGCGCCAGC TCGGAGAAGG TGGCTTCGCC TACGTCTACC TCGTCAAGGA GCTTATCAAC GATTCCGCCG
CCGGTGGCCT TGCCAAGAAG CTCAAAGACT CCTCTCATGT CTCCGAGGAT GGGACTTATG CTATGAAAAA GGTCCTCATT
CAGAACAATG AACAGCTGGA GTTGGTCAGG GAGGAGATCC GTGTTTCGTC ACTGTTCAAT CATCCCAATC TGCTCCCACT
TCTTGATCAT GCTATTATTT CTGTTAAGCC TACCCAAGAA ACGTCTTGGA ACCATGAAGC GTACTTGCTG TTTCCAGTTC
ATATGGATGG AACATTGCTA GACAATGCCA AAGTAATGAA AACCAAGAAG GAATTCTATT CCACCTCAGA TGTTCTTCAA
ATATTTCGTC AGCTTTGTGC AGGACTCAAG CACATGCACA GCTTTGATCC TCCTTATGCA CATAATGATG TGAAACCTGG
TAATGTTCTC ATAACACACA GAAAAGGACA GCCACCTCTT GCCATACTGA TGGATTTTGG CAGTGCTCGT CCTGCAAGGA
AGCAAATTAC GAACAGATCA GAAGCACTCC AGTTACAGGA ATGGGCAGCT GAACACTGCT CTGCACCTTT CCGAGCTCCT
GAGCTGTGGG ATTGTCCAAG CCAAGCTTCT ATAGATGAGA GGACTGACGT TTGGTCACTA GGATGCACAT TATATGCAAT
AATGTATGGG GTATCTCCAT TTGAATATGC ACTGGGAGAG TCTGGTGGAA GCCTGCAATT GGCTATAGTA AATGCTCAGG
TGAAATGGCC AGCTGGACCT AAGCCTCCAT ATCCAGAAGC TTTTCACCAG TTCGTGTCAT GGATGCTTCA GCCCCAGGCT
GCTATGAGGC CCCGAATAGA TGATATCATC ATCCATGTGG ATAAGTTGAT TGCAAAGTTC ACCCAATGA

[show][hide][copy]PROTEIN

>Vigan.01G449400.01
MGCSFSGLNA LYDSVNSGGD AWINENRFRI VRQLGEGGFA YVYLVKELIN DSAAGGLAKK LKDSSHVSED GTYAMKKVLI
QNNEQLELVR EEIRVSSLFN HPNLLPLLDH AIISVKPTQE TSWNHEAYLL FPVHMDGTLL DNAKVMKTKK EFYSTSDVLQ
IFRQLCAGLK HMHSFDPPYA HNDVKPGNVL ITHRKGQPPL AILMDFGSAR PARKQITNRS EALQLQEWAA EHCSAPFRAP
ELWDCPSQAS IDERTDVWSL GCTLYAIMYG VSPFEYALGE SGGSLQLAIV NAQVKWPAGP KPPYPEAFHQ FVSWMLQPQA
AMRPRIDDII IHVDKLIAKF TQ*