GBrowse Details

Vigan.01G451400.01

Basic Information:
Name: Vigan.01G451400.01
Multiple alignment
Variant Information
Position: Chr01:58202403..58208512 (- strand)
Length: 6110
Functional Information:
Description: Similar to Uncharacterized protein. [I1MT91, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.32,8.48,26.40,5.01,7.13,16.93,8.11
Automatic updates:
Name: KT031177 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_28 MADS transcription factor (Glyma05g07380.1) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001317577 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max truncated transcription factor CAULIFLOWER A-like (LOC100798351), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58202403..58202628 (- strand)
Length: 226
Type: three_prime_UTR
Position: Chr01:58202629..58202728 (- strand)
Length: 100
Type: CDS
Position: Chr01:58202925..58203034 (- strand)
Length: 110
Type: CDS
Position: Chr01:58203128..58203169 (- strand)
Length: 42
Type: CDS
Position: Chr01:58203381..58203422 (- strand)
Length: 42
Type: CDS
Position: Chr01:58203511..58203610 (- strand)
Length: 100
Type: CDS
Position: Chr01:58203689..58203753 (- strand)
Length: 65
Type: CDS
Position: Chr01:58204958..58205036 (- strand)
Length: 79
Type: CDS
Position: Chr01:58207874..58208163 (- strand)
Length: 290
Type: CDS
Position: Chr01:58208164..58208512 (- strand)
Length: 349
Type: five_prime_UTR


>Vigan.01G451400.01
GAGTAAATAA TTTAGTTAAA ATCATAACAA AACAAAACAG AAGAGTCTGA AAGCACTGTT ATATAATAAC AGAAAAGAAA
GATTGTATAT GTAAGGTGTG TGGCAGCGCT TAGAGAAAGG GTGGGACCAG ACTACAGGAA CAGGACAGTG GGTCTAACCA
ATCGCAGGCA GACAACGTAT TTGTGGAAAC CACTCAGGTT TTGAAAACCA CGTTGTAGAT CCGATCAGCA GTTTGGCTTT
CTTGTGTTTC CCCAATAGTT AATTTATTTA TAATAGTAAA TAGAAAATAC CCACCATAAG ATATTTGCGT TTTCTAATAA
AGAACGTAGA AGTTGCGGTA TTTATTTGGA TGTACCTTTT CCTTCCTCTG TCTCGTTTCT TCCTCTCACA TTCTTCCTCT
CCCATTGAAT TGGTAGCAGT GAGGCAATCG TGGAGAAGCT TCAAGAATTT CTCAATGGGA AGGGGAAGAG TGGAGTTGAA
AAGGATCGAA AACAAGATCA ACAGGCAAGT CACCTTCTCA AAGAGAAGGT CTGGTTTGAT CAAGAAAGCC CGCGAGATCT
CTGTGCTTTG CGATGCTGAT GTGGCTCTCA TAGTCTTCTC TACTAAAGGC AAACTTTTGG AATACTCTAA CCAGCCTTCT
ATGGAAAGAA TTCTTGAACG GTATGAGAGG CATTCGTATG CGGAGAAGCA AGAAGGTGCA GCTGATCAAC CACCAAATGA
AAACTGGGCT ATAGAACACG AAAAGTTGAA GGCTAGAGTG GAGGTACTAC AGCGACACCA AAGGAATTTC ATGGGAGAAG
AGCTTGATAA CATAAATCTT AGAGGACTTC AGAGTTTAGA ACAACAACTT GATTCCGCCC TCAAACACAT TAGATCACGA
AAGAACCAAG CCATGCATGA ATCTATTTCA GAGCTTCATA AAAAGGATAA GGCACTTCGG GAACGTAACA ACTTGCTCGC
CAAGAAGATA AAAGAAAAAG AGAAGGCAGT GGTTCCTCAA GAACAGGAGG GGTTGCTAAA TAACGGGGAT GTGACTTCTC
TCATGGTAAC TAAGCCATTG GAGTCCCTGA ATATTGGAGG CTCCCCAGAA GCGAGATGTA ATGAAGGAAC TCCAACATCA
ACTCAACCTA AAACCATAAT TCCTCCTTGG ATGGTGACTC TTCCTACAGA TGAATAGAAG AAGCTTGTTA GATCATTCCA
CTTGTATATA AGTTCACGTA CATGAAGACA TTTGCTGCTG TCTATACCGC TTGGGTTGTA ACTTGTGAGC TACGTTACTG
CATTTTGCTA TGTACATCAA AGGTTCTGCA TATAATAATA CTAATTAAAT TGTTTCAACT AAAAGGGTTC AAGTTTACGA
CATGTCCAAT ATAAAATTCT TGATAACTTT ACCAATAGTG CCG

>Vigan.01G451400.01
ATGTACCTTT TCCTTCCTCT GTCTCGTTTC TTCCTCTCAC ATTCTTCCTC TCCCATTGAA TTGGTAGCAG TGAGGCAATC
GTGGAGAAGC TTCAAGAATT TCTCAATGGG AAGGGGAAGA GTGGAGTTGA AAAGGATCGA AAACAAGATC AACAGGCAAG
TCACCTTCTC AAAGAGAAGG TCTGGTTTGA TCAAGAAAGC CCGCGAGATC TCTGTGCTTT GCGATGCTGA TGTGGCTCTC
ATAGTCTTCT CTACTAAAGG CAAACTTTTG GAATACTCTA ACCAGCCTTC TATGGAAAGA ATTCTTGAAC GGTATGAGAG
GCATTCGTAT GCGGAGAAGC AAGAAGGTGC AGCTGATCAA CCACCAAATG AAAACTGGGC TATAGAACAC GAAAAGTTGA
AGGCTAGAGT GGAGGTACTA CAGCGACACC AAAGGAATTT CATGGGAGAA GAGCTTGATA ACATAAATCT TAGAGGACTT
CAGAGTTTAG AACAACAACT TGATTCCGCC CTCAAACACA TTAGATCACG AAAGAACCAA GCCATGCATG AATCTATTTC
AGAGCTTCAT AAAAAGGATA AGGCACTTCG GGAACGTAAC AACTTGCTCG CCAAGAAGAT AAAAGAAAAA GAGAAGGCAG
TGGTTCCTCA AGAACAGGAG GGGTTGCTAA ATAACGGGGA TGTGACTTCT CTCATGGTAA CTAAGCCATT GGAGTCCCTG
AATATTGGAG GCTCCCCAGA AGCGAGATGT AATGAAGGAA CTCCAACATC AACTCAACCT AAAACCATAA TTCCTCCTTG
GATGGTGACT CTTCCTACAG ATGAATAG

>Vigan.01G451400.01
MYLFLPLSRF FLSHSSSPIE LVAVRQSWRS FKNFSMGRGR VELKRIENKI NRQVTFSKRR SGLIKKAREI SVLCDADVAL
IVFSTKGKLL EYSNQPSMER ILERYERHSY AEKQEGAADQ PPNENWAIEH EKLKARVEVL QRHQRNFMGE ELDNINLRGL
QSLEQQLDSA LKHIRSRKNQ AMHESISELH KKDKALRERN NLLAKKIKEK EKAVVPQEQE GLLNNGDVTS LMVTKPLESL
NIGGSPEARC NEGTPTSTQP KTIIPPWMVT LPTDE*