GBrowse Details

Vigan.01G454400.01

Basic Information:
Name: Vigan.01G454400.01
Multiple alignment
Variant Information
Position: Chr01:58484143..58488370 (- strand)
Length: 4228
Functional Information:
Description: Similar to glucan endo-1,3-beta-glucosidase-like protein 3-like isoform X1. [XP_003527110.1, Glycine max]
InterPro: X8 (IPR012946)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.26,4.21,82.16,16.69,84.03,256.69,35.29,66.08
Automatic updates:
Name: NM_001249559 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500078 (LOC100500078), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253095 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glucan endo-1,3-beta-glucosidase-like protein 3-like (LOC100797001), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58484143..58484741 (- strand)
Length: 599
Type: three_prime_UTR
Position: Chr01:58484742..58485027 (- strand)
Length: 286
Type: CDS
Position: Chr01:58487062..58487095 (- strand)
Length: 34
Type: CDS
Position: Chr01:58487210..58487446 (- strand)
Length: 237
Type: CDS
Position: Chr01:58487863..58487914 (- strand)
Length: 52
Type: CDS
Position: Chr01:58487915..58488370 (- strand)
Length: 456
Type: five_prime_UTR


>Vigan.01G454400.01
GAAGATAAAC AGTGACACAC TCCCATAGGT GCCTTCTTCA GTGACTGCTT AGGCCTCCTC ACTCACTCAC CCCTGTTAGG
CTTTTACGAG TCCCTATGAA ACTATTTCCC TCCCTTGATA TAGGGTAAAG AAAAGAGGAG CGTGATTAGA AACACAACTA
TTATTTACAT TATTTTTAAC TACATTAAGT AGTAGTAGTA GTAGTGAGAC TGAAATTGCA AAAGTACAAA AAGCATTCAC
AAGCCGACAC GAAAAGAGGC CAACCATTAT CCCACCGTTT ACACATTACA CAACTTTACC ATCTCCTCTC TTCCCCTGTG
TTATATTTTG TCCTCATATT CTCATCTCAT CTCACACACT CTGTCACGCA CCCACCATTC TCCTTCCTCT CTCTCTGCTC
TACTACGTAT AATCCCCTTC TCACCACACC ATTGCTCTAC CTCATCGTCC CCTAACATGG CTGCTCTAGC TCTTACACTG
CTTCTTTTGG CTTTCACTGG CACTTCAAGT GCAACTTGGT GCGTTTGTAA GGATGGAGGC GACGCGATCC TGCAGAAAAC
ATTGGACTAT GCTTGTGGAG CTGGTGCTGA CTGTAACCCT CTCCATCAAA ACGGGCCTTG CTTCCAGCCC AACACTGTAA
GGGCGCACTG CAACTACGCC GTGAATAGCT ACTTCCAAAA GAAGGGTCAG GCTCAAGGGT CCTGTGAGTT TGCAGGAACA
GCCACTGTTA CTGCTACTGA CCCCAGCACT GGCGGTTGTG CCTACCCTTC AAGTGTCAGT GCTGCAGGCA CTGGTACAAC
TCCTGTCACA ACTACACCAA CCATGGGCAC CACTCCCACC ACTGGAACCC CATCAACCGG TACCGGTACC GGCACCGGCA
CTGGAACCAC CACTGGTACT ACTCCATACA GCACAACACC CGGAGTATTA GGAGGCATTG GCAGTGGCAT GGGACCTTCA
GGATCCGGCA TGAATGATGA GAGTCACGGT GGCCTTAGAC TAGTGCACTC TAGCTTCTTC TTCATCTCTC TCTTCTCTTC
CTTCATGATC TTCTGCTGGG GCTGAGAATG TATGAGCAAA ATGCTCAATG TCACTGTATT ATTGTGAATG TTATTTTTCT
AGGTGTTGAA CTTGGGGACG TTGCATTTTG GGCTCTTGAA ATATCTTTCT CCACCTTCCA CTAGCTATTG GCTTTTTGAT
TTATTAATTA TTGAATTTGG CAACACTTCA CCTCTACTTT TTCTTTCTTA GCCTCCTCCT ACTCTGTACC AAAAAGTACA
CAACGTAATC TGTGAAAGGG GTTTTCTGGT TTTTCAAAGA AGTGGAATGA TATATAAGCC ATGTCAATTA ACCAAACAAA
GCATGCTCTG TCCATTTCAA TTTCAAACTT AGTTTTTGAT TGACTATGGT CTTGTTGTAG TCAAACAGTG TGGTCCTTGT
AATTGAAATG TTGAGCTGTA TACTGCTGAA AGAGAAAGCA CGACAACATA TGGCAGCATT AGGGTAGTAT TGAGCATGAA
AAATCTATCA CATGGAAAAC CATTTTTGAA TTGGTGTTAT TTTTAAAACA CAACGTATGG GCTGTTACCT GATTCACTTG
ATTGCTTAAA TAATATGGTG TTTGTCTTCC CAATGTATTA TTTATTTGTC CATTTTGTGC AAGG

>Vigan.01G454400.01
ATGGCTGCTC TAGCTCTTAC ACTGCTTCTT TTGGCTTTCA CTGGCACTTC AAGTGCAACT TGGTGCGTTT GTAAGGATGG
AGGCGACGCG ATCCTGCAGA AAACATTGGA CTATGCTTGT GGAGCTGGTG CTGACTGTAA CCCTCTCCAT CAAAACGGGC
CTTGCTTCCA GCCCAACACT GTAAGGGCGC ACTGCAACTA CGCCGTGAAT AGCTACTTCC AAAAGAAGGG TCAGGCTCAA
GGGTCCTGTG AGTTTGCAGG AACAGCCACT GTTACTGCTA CTGACCCCAG CACTGGCGGT TGTGCCTACC CTTCAAGTGT
CAGTGCTGCA GGCACTGGTA CAACTCCTGT CACAACTACA CCAACCATGG GCACCACTCC CACCACTGGA ACCCCATCAA
CCGGTACCGG TACCGGCACC GGCACTGGAA CCACCACTGG TACTACTCCA TACAGCACAA CACCCGGAGT ATTAGGAGGC
ATTGGCAGTG GCATGGGACC TTCAGGATCC GGCATGAATG ATGAGAGTCA CGGTGGCCTT AGACTAGTGC ACTCTAGCTT
CTTCTTCATC TCTCTCTTCT CTTCCTTCAT GATCTTCTGC TGGGGCTGA

>Vigan.01G454400.01
MAALALTLLL LAFTGTSSAT WCVCKDGGDA ILQKTLDYAC GAGADCNPLH QNGPCFQPNT VRAHCNYAVN SYFQKKGQAQ
GSCEFAGTAT VTATDPSTGG CAYPSSVSAA GTGTTPVTTT PTMGTTPTTG TPSTGTGTGT GTGTTTGTTP YSTTPGVLGG
IGSGMGPSGS GMNDESHGGL RLVHSSFFFI SLFSSFMIFC WG*