GBrowse Details

Vigan.01G457200.01

Basic Information:
Name: Vigan.01G457200.01
Multiple alignment
Variant Information
Position: Chr01:58719678..58721242 (+ strand)
Length: 1565
Functional Information:
Description: Similar to Eukaryotic translation initiation factor 5A. [J7LMM2, Arachis hypogaea]
GO: Biological Process: translational frameshifting (GO:0006452)
Biological Process: peptidyl-lysine modification to hypusine (GO:0008612)
Biological Process: positive regulation of translational elongation (GO:0045901)
Biological Process: positive regulation of translational termination (GO:0045905)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: translation elongation factor activity (GO:0003746)
Molecular Function: ribosome binding (GO:0043022)
InterPro: Translation elongation factor IF5A (IPR001884)
Translation protein SH3-like domain (IPR008991)
Nucleic acid-binding, OB-fold (IPR012340)
Ribosomal protein L2 domain 2 (IPR014722)
Translation elongation factor, IF5A, hypusine site (IPR019769)
Translation elongation factor, IF5A C-terminal (IPR020189)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:437.14,286.62,143.02,155.04,308.35,291.47,204.03,153.55
Automatic updates:
Name: NM_001249052 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 5A-1 (LOC100305991), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250529 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 5A3 (LOC100499632), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251538 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 5A (EIF5A), mRNA.
PubMed ID: 27019403 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:58719678..58719927 (+ strand)
Length: 250
Type: five_prime_UTR
Position: Chr01:58719928..58720050 (+ strand)
Length: 123
Type: CDS
Position: Chr01:58720251..58720373 (+ strand)
Length: 123
Type: CDS
Position: Chr01:58720475..58720531 (+ strand)
Length: 57
Type: CDS
Position: Chr01:58720628..58720702 (+ strand)
Length: 75
Type: CDS
Position: Chr01:58720810..58720914 (+ strand)
Length: 105
Type: CDS
Position: Chr01:58720915..58721242 (+ strand)
Length: 328
Type: three_prime_UTR


>Vigan.01G457200.01
TTTTTTTTTA AACTGGATTT TTTTGGGCCT GAAGCCCAAT TACAATAGCG TCTATCTGAC GCATGAGAAA GATCCAACGG
TGTAGAAACA AACACAAGAA GATCTGATAC AGAAAGGAAA ATAAAACCCT AACTGGATAG GTTGAGTTTG GTGGCGAAGG
AAAATATTAT ATAGATACAG AGATCTGTAC TTGTATCTTC ACTTGCTCTT CTCCGCCAGT TCTAAAATCA TCCGTTTTCA
ATCCCAAGCC ATGTCGGACG AAGAGCACCA TTTCGAGTCC AAGGCTGATG CCGGAGCATC CAAAACCTAC CCTCAGCAAG
CCGGTACCAT TCGTAAGAAT GGTTACATAG TCATCAAAAG CCGTCCCTGC AAGGTTGTGG AAGTTTCCAC TTCCAAAACT
GGAAAGCATG GTCACGCCAA GTGTCATTTT GTTGGAATTG ATATTTTCAC TGGCAAGAAA CTTGAGGATA TTGTGCCCTC
CTCTCACAAC TGTGATGTTC CTCATGTGAA TCGTACTGAC TATCAGCTCA TTGATATTTC TGAGGATGGA TTTGTGAGTC
TGCTTACTGA AAACGGGAAC ACTAAGGATG ACCTCAGGCT CCCTACTGAT GACAGTCTTC TGACTCAGAT AAAGGATGGA
TTTGCTGAGG GCAAGGACCT TGTTGTGTCT GTGATGTCTG CTATGGGGGA GGAACAGATT TGTGCTTTGA AGGACATTGG
GCCGAAGAAT TAGCTTTTCG TGTGGCTGTT TCTTGTTTTT ATTTAAGCAA AATTATTTTT GTAAACCTTG GTTTGTTCAA
GAACTGCTTA TAGATTTTAG TCAGACTAGT CTTAACCATT GTGTTTTTCT GTTGTCATGT GATTTTATTA TGAAAAGAAG
AGTATGTGGG AATTATTTTT GGTATTATAT GATGAATGGT GAATATTTTT GGTATGATAT GATGAGTTTC ATGAGGAGAC
TTGCATGATA AACAGGCAAT GTGAGAGTGG GAATTCATAA AAAGATTGTT AAATTTTCTT TTAAAAAAAT ATAATATCAA
ATCTAGTAAT ATTTTTGAAA A

>Vigan.01G457200.01
ATGTCGGACG AAGAGCACCA TTTCGAGTCC AAGGCTGATG CCGGAGCATC CAAAACCTAC CCTCAGCAAG CCGGTACCAT
TCGTAAGAAT GGTTACATAG TCATCAAAAG CCGTCCCTGC AAGGTTGTGG AAGTTTCCAC TTCCAAAACT GGAAAGCATG
GTCACGCCAA GTGTCATTTT GTTGGAATTG ATATTTTCAC TGGCAAGAAA CTTGAGGATA TTGTGCCCTC CTCTCACAAC
TGTGATGTTC CTCATGTGAA TCGTACTGAC TATCAGCTCA TTGATATTTC TGAGGATGGA TTTGTGAGTC TGCTTACTGA
AAACGGGAAC ACTAAGGATG ACCTCAGGCT CCCTACTGAT GACAGTCTTC TGACTCAGAT AAAGGATGGA TTTGCTGAGG
GCAAGGACCT TGTTGTGTCT GTGATGTCTG CTATGGGGGA GGAACAGATT TGTGCTTTGA AGGACATTGG GCCGAAGAAT
TAG

>Vigan.01G457200.01
MSDEEHHFES KADAGASKTY PQQAGTIRKN GYIVIKSRPC KVVEVSTSKT GKHGHAKCHF VGIDIFTGKK LEDIVPSSHN
CDVPHVNRTD YQLIDISEDG FVSLLTENGN TKDDLRLPTD DSLLTQIKDG FAEGKDLVVS VMSAMGEEQI CALKDIGPKN
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