VIGGS:GBrowse

Vigan.01G457300.01

Basic Information:

Name:	Vigan.01G457300.01 Multiple alignment Variant Information
Position:	Chr01:58726078..58729133 (+ strand)
Length:	3056

Functional Information:

Description:	Similar to HNH endonuclease domain-containing family protein. [A9P7V3, Populus trichocarpa]
GO:	Molecular Function: nucleic acid binding (GO:0003676)
GO:	Molecular Function: endonuclease activity (GO:0004519)
InterPro:	HNH endonuclease (IPR002711)
InterPro:	HNH nuclease (IPR003615)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:77.02,110.14,14.62,18.49,29.98,15.21,39.96,13.20
Arabidopsis thaliana homolog:	AT1G18680.1

Automatic updates:

Name:	NM_001248511 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527904 (LOC100527904), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:58726078..58726157 (+ strand)
Length:	80
Type:	five_prime_UTR

Position:	Chr01:58726158..58726380 (+ strand)
Length:	223
Type:	CDS

Position:	Chr01:58726491..58726613 (+ strand)
Length:	123
Type:	CDS

Position:	Chr01:58728754..58728899 (+ strand)
Length:	146
Type:	CDS

Position:	Chr01:58728900..58729133 (+ strand)
Length:	234
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G457300.01
CAGAAATAAA AACATAGATC CTTCTTGTTC AGCTGTTGCT CCTTTTTCCC TGCTCCCTGT AGTGTAGAGC GAGGAGGAGG
ATGAGTTCTT CTCCGCCTCG TTCTCGTGGC GACGGCGAGA AAAGACCCAG GTTTTTCGAC TCAAACGCCA AGACCCTCTG
TTGGTCCAAG GCTGATATTG TCCCCGGCCG TCACCCTGAG AGGTGGCGCA AAGACGCCGC GGGTAACATT GTCTGCAAAC
GTTTCTACAA CTGCATCGGC TGCCTCTGCT ACGAGTACGA TCACATCATC CCCTTCTCCA AAGGTGGTGA GTCCACAGCA
GATAATTGTC AAATACTTCA ATCAAGAGTT AACAGACTCA AATCGGACAA ATATGACATT GATTCTAATC AATTGAAAGA
CTACTCTTGT GAGGTTAATT TTACTGATAA GGAGCTTGAT ATAATTGAGA TGGCTGTTTA CGGGGATGTG GTGCGGCCTG
GAAATCAGTG TCGTTGCAGA ACTATTGCTG AGAAACTTGG CAAATTTAAA CCAAAAGATG ACAAAGATGC TTGTAAGTTG
CCACAGGGAT GAATCTTAAC TGTAGCCAGC GACTATACAA CATAAATAAT GTATTGAAAA CAGAAGCTCA TGCCAAATAA
GTTTTAGACA AAAAACAATT GTTTCACCTT ATATCATACC ATTTGGTCTA GCGTTAGGAT TGACATCTAG ACCTAGTTGT
TAACAATAAT TCTAGGTTTC TGACTTCTTT AAAGTAACCT CTAAAGTAAT AGGGAAAAAA AATATATTAT CAATGACACA
TTATAG

[show][hide][copy]CDS

>Vigan.01G457300.01
ATGAGTTCTT CTCCGCCTCG TTCTCGTGGC GACGGCGAGA AAAGACCCAG GTTTTTCGAC TCAAACGCCA AGACCCTCTG
TTGGTCCAAG GCTGATATTG TCCCCGGCCG TCACCCTGAG AGGTGGCGCA AAGACGCCGC GGGTAACATT GTCTGCAAAC
GTTTCTACAA CTGCATCGGC TGCCTCTGCT ACGAGTACGA TCACATCATC CCCTTCTCCA AAGGTGGTGA GTCCACAGCA
GATAATTGTC AAATACTTCA ATCAAGAGTT AACAGACTCA AATCGGACAA ATATGACATT GATTCTAATC AATTGAAAGA
CTACTCTTGT GAGGTTAATT TTACTGATAA GGAGCTTGAT ATAATTGAGA TGGCTGTTTA CGGGGATGTG GTGCGGCCTG
GAAATCAGTG TCGTTGCAGA ACTATTGCTG AGAAACTTGG CAAATTTAAA CCAAAAGATG ACAAAGATGC TTGTAAGTTG
CCACAGGGAT GA

[show][hide][copy]PROTEIN

>Vigan.01G457300.01
MSSSPPRSRG DGEKRPRFFD SNAKTLCWSK ADIVPGRHPE RWRKDAAGNI VCKRFYNCIG CLCYEYDHII PFSKGGESTA
DNCQILQSRV NRLKSDKYDI DSNQLKDYSC EVNFTDKELD IIEMAVYGDV VRPGNQCRCR TIAEKLGKFK PKDDKDACKL
PQG*