GBrowse Details

Vigan.01G458800.01

Basic Information:
Name: Vigan.01G458800.01
Multiple alignment
Variant Information
Position: Chr01:58849292..58852941 (+ strand)
Length: 3650
Functional Information:
Description: Similar to Uncharacterized protein. [I1JZM9, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.60,13.27,11.14,16.40,14.52,19.99,23.56,10.11
Arabidopsis thaliana homolog: AT1G74410.1
Automatic updates:
Name: NM_001251492 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING/U-box superfamily protein (LOC100306666), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58849292..58849551 (+ strand)
Length: 260
Type: five_prime_UTR
Position: Chr01:58849552..58849651 (+ strand)
Length: 100
Type: CDS
Position: Chr01:58850261..58850439 (+ strand)
Length: 179
Type: CDS
Position: Chr01:58850642..58850725 (+ strand)
Length: 84
Type: CDS
Position: Chr01:58852213..58852374 (+ strand)
Length: 162
Type: CDS
Position: Chr01:58852589..58852711 (+ strand)
Length: 123
Type: CDS
Position: Chr01:58852712..58852941 (+ strand)
Length: 230
Type: three_prime_UTR


>Vigan.01G458800.01
TTTTCCTTGA CCTTACCAAG CCCTATCATA CCATCAAATT CCATCATCTT CATCACTTTT CTTTCAATTG ACCTTACCTT
ACCTCACCTT TCAATTCATT TTTTTCGTTT CCCATCCCTT CAAATCCCAT CATCATCATC GTCGTCATCA TCGCATCATC
TTATCACCAA TAAACAACAA GAAGAACAAC AGCCATGGCC TTGAAGTCTG CAACTCTCTG ACATATAATT AGATTCCCAG
TTTGGGTTGG GTTGGGCACT ATGGAAACTG AAATAATCCA GGGACCTTGG GGATTTCGCT CTCTACCCAA ATTCATATTG
TGCACCATTT CTGGGGCCCT CACCGTGTGT TTTGCCATTG CTGGTGCCAT GACAGGAGCT ATAGCCGGTG CTTTAGCAGC
TAAGGCTACA AGGAGCGGTC TTCTCCGGGG AGTTTCTTTG GGTGCCATTG CCGGGTCTAT ACTCTCAGTG GAGGTGTTGG
AAGCTTCCCG TGCATACTGG TGTATGGAAC AAACTGGCTC ACGGGGAGCA TCATCTATGG CAGATTTCAT AGAGGAACTT
GTTCGGGGGA GGCTTGTTGA GGAATCCCTT ACACCAGCCA TTTTAACTGC CTACAACTTG CAGTTTGAGC AGGTTGGCAT
TGCTAATGCA GGCTATGATG AGATTCATGA TGTTCATGGC TTGGTGGCAC CGAGAGGATT GTCAGGAGAT TCGCTCAAGA
GGTTACCACA CCATATGATC TCAAAGGATA TGAAGGCAGA AAATACTTGT ACAATATGTT TGCAGGATAT TGAAGTAGGC
GAAATTGCAA GAAGCTTACC TCGCTGTCAC CATACATTTC ACTTGATATG TGTGGACAAA TGGCTTGTCA AGAATGATTC
CTGTCCTGTC TGTAGGCAGA ATGTGTAATT GTTGCTTGTG CATTCTGAGA TTATCTTTAT GGGAAGATGT ATAAGTTGTA
TAATTTGTTT TTATAAACTG CATTAAGTTT TGTACAGTTG ACTTTGGCAT TTTGTAGTAT TATCTGATGT AATTATTAAT
AAGACTATTT GCCCAATAAC AAATGTTTTG GGAGAAAAAG AATTTAGAAA ATAGCATGCT TTAATATTTG AACGAATGAC
TCTTACTTTC ATAAGCAC

>Vigan.01G458800.01
ATGGAAACTG AAATAATCCA GGGACCTTGG GGATTTCGCT CTCTACCCAA ATTCATATTG TGCACCATTT CTGGGGCCCT
CACCGTGTGT TTTGCCATTG CTGGTGCCAT GACAGGAGCT ATAGCCGGTG CTTTAGCAGC TAAGGCTACA AGGAGCGGTC
TTCTCCGGGG AGTTTCTTTG GGTGCCATTG CCGGGTCTAT ACTCTCAGTG GAGGTGTTGG AAGCTTCCCG TGCATACTGG
TGTATGGAAC AAACTGGCTC ACGGGGAGCA TCATCTATGG CAGATTTCAT AGAGGAACTT GTTCGGGGGA GGCTTGTTGA
GGAATCCCTT ACACCAGCCA TTTTAACTGC CTACAACTTG CAGTTTGAGC AGGTTGGCAT TGCTAATGCA GGCTATGATG
AGATTCATGA TGTTCATGGC TTGGTGGCAC CGAGAGGATT GTCAGGAGAT TCGCTCAAGA GGTTACCACA CCATATGATC
TCAAAGGATA TGAAGGCAGA AAATACTTGT ACAATATGTT TGCAGGATAT TGAAGTAGGC GAAATTGCAA GAAGCTTACC
TCGCTGTCAC CATACATTTC ACTTGATATG TGTGGACAAA TGGCTTGTCA AGAATGATTC CTGTCCTGTC TGTAGGCAGA
ATGTGTAA

>Vigan.01G458800.01
METEIIQGPW GFRSLPKFIL CTISGALTVC FAIAGAMTGA IAGALAAKAT RSGLLRGVSL GAIAGSILSV EVLEASRAYW
CMEQTGSRGA SSMADFIEEL VRGRLVEESL TPAILTAYNL QFEQVGIANA GYDEIHDVHG LVAPRGLSGD SLKRLPHHMI
SKDMKAENTC TICLQDIEVG EIARSLPRCH HTFHLICVDK WLVKNDSCPV CRQNV*