GBrowse Details

Vigan.01G461700.01

Basic Information:
Name: Vigan.01G461700.01
Multiple alignment
Variant Information
Position: Chr01:59118148..59120731 (+ strand)
Length: 2584
Functional Information:
Description: Similar to Uncharacterized protein. [I1MTS7, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.61,9.63,6.19,8.93,5.77,7.78,9.60,5.33
Arabidopsis thaliana homolog: AT3G47640.1
Automatic updates:
Name: NM_001253240 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor bHLH47-like (LOC100782436), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:59118148..59118761 (+ strand)
Length: 614
Type: five_prime_UTR
Position: Chr01:59118762..59118811 (+ strand)
Length: 50
Type: CDS
Position: Chr01:59119531..59119649 (+ strand)
Length: 119
Type: CDS
Position: Chr01:59119777..59119901 (+ strand)
Length: 125
Type: CDS
Position: Chr01:59120123..59120488 (+ strand)
Length: 366
Type: CDS
Position: Chr01:59120489..59120731 (+ strand)
Length: 243
Type: three_prime_UTR


>Vigan.01G461700.01
AGAAAATCAC GTGGCGAACT CATTGATGAT TGTTGATTGC ACTGAATGAG CTTGACCTGG CCACGCGCCT TCGTGTGACA
GGTGCTCTCC GGCCACACGC CATCCCACAA TCCAATCTTC TTTCCTCTCT CTTGTGCCCT AATTCTCATT TTCTAACTTT
CTTATTTTCA CTCCAAACTC TATCCTTCAA TTTCACTGTT CCAATTCTAT TTCTGTTCAG TCTCCTTAGC GGGTTAGGTA
AGCAAAACCA CTTTCTCTGA TGCGATTATG CAATTTTTCT GTTTTATTTG TTTTATTCAG TTATTTCCTT TTATGCTCTG
AATTTATTGA TACTCTGTTT GGCTGCTATG AACTGTGAAA ATTAAAATTC AGAATTTGGC TTCTTCTTTT CTCCATAGCT
TTATCTGATT GGATTGCTTG TGAGGGGATT GATTGTATCA AGGAAAGTGG ATTTTCCTTC GGTATCCGGC TCAAAAAAAG
AAAATTCAAT ATTTATTTGG GTGTTCAATT TACTAGTCCT TACTTTTTAT AAGAGGAGTA AGTGCAGTAT TGAAGTAGTT
TTTCTTTTCC AGTTTAGGAA ATTTTAAAAT TTTGTTGCTG AAGGCTTTGT TCACATGGGA TCAGAGGGTG TGGCTCCTGC
AGTTGTTGGG ACATCAAAAA GCAGGTCTTC TTCTGGTAAA ATGAACCAAG GGAAAGTCCC CAGGAAAATT CACAAGGCCG
AAAGGGAGAA AATGAAACGT GAACATTTGA ATGAACTCTT TCTTGATCTT GCCAATGCAC TTGATGTGAA TGAGAACAAT
GGAAAGGCTT CTATATTGTG TGAAGCGGCT AGGTTGCTAA AAGACTTGCT CTCTCAGATC GAGTCCCTCA AGAAAGAGAA
TGTCACACTG TTGTCTGAAT CGCATTATGT GACCATGGAG AAAAATGAGC TGAAGGAGGA GAATTGTAGC CTAGAAACTC
AAATTGAGAA ACTTCAAGGA GAGATACAGG CAAGAGTTGC TCAATCTAAA CCTGACCTGA ATGTACCTCC CCATTTGGAA
CTTGACCCAC TGGAGCAGTC AAATTTTCCA GGACAGAGTC TCCAATTGCA TACTATGGAA CCTAACTTGC AGCAAGGATC
TGCAGTTTTG CTTGTCCCTT TTCCCGATCT TCAAGCTTCA TTTCCAGCTG CTAATGTTAA CGAAGTAGCT CCAAATTCCT
CTTCTGTTGT CAGTAAACCG CATGCAAGGT ATCCCACAGC AGCAGATTCA TGGCCATCAC AGTTGCTTGG ATAGTAACCA
AACTTCAATT TAATTTGTAT AGTTTCGGCA TTGATTTATC ATGCCAACTA GCTTTCCTAT AGCAATGCCT CTGTGGAGAT
TTCATGTATA AATTATATAT ATTCAATGAT CTAAGAGAAT CTCACTCGTG AGCTTTGTTT TCTTATGGCT GAAAGTCAGT
TGTTAATTGT AGAAACGTTT TTGTGTGCTT TTCTAGGACC ACGTCTGATA AATGAACTCC TCTATTCTGG GATGCAA

>Vigan.01G461700.01
ATGGGATCAG AGGGTGTGGC TCCTGCAGTT GTTGGGACAT CAAAAAGCAG GTCTTCTTCT GGTAAAATGA ACCAAGGGAA
AGTCCCCAGG AAAATTCACA AGGCCGAAAG GGAGAAAATG AAACGTGAAC ATTTGAATGA ACTCTTTCTT GATCTTGCCA
ATGCACTTGA TGTGAATGAG AACAATGGAA AGGCTTCTAT ATTGTGTGAA GCGGCTAGGT TGCTAAAAGA CTTGCTCTCT
CAGATCGAGT CCCTCAAGAA AGAGAATGTC ACACTGTTGT CTGAATCGCA TTATGTGACC ATGGAGAAAA ATGAGCTGAA
GGAGGAGAAT TGTAGCCTAG AAACTCAAAT TGAGAAACTT CAAGGAGAGA TACAGGCAAG AGTTGCTCAA TCTAAACCTG
ACCTGAATGT ACCTCCCCAT TTGGAACTTG ACCCACTGGA GCAGTCAAAT TTTCCAGGAC AGAGTCTCCA ATTGCATACT
ATGGAACCTA ACTTGCAGCA AGGATCTGCA GTTTTGCTTG TCCCTTTTCC CGATCTTCAA GCTTCATTTC CAGCTGCTAA
TGTTAACGAA GTAGCTCCAA ATTCCTCTTC TGTTGTCAGT AAACCGCATG CAAGGTATCC CACAGCAGCA GATTCATGGC
CATCACAGTT GCTTGGATAG 

>Vigan.01G461700.01
MGSEGVAPAV VGTSKSRSSS GKMNQGKVPR KIHKAEREKM KREHLNELFL DLANALDVNE NNGKASILCE AARLLKDLLS
QIESLKKENV TLLSESHYVT MEKNELKEEN CSLETQIEKL QGEIQARVAQ SKPDLNVPPH LELDPLEQSN FPGQSLQLHT
MEPNLQQGSA VLLVPFPDLQ ASFPAANVNE VAPNSSSVVS KPHARYPTAA DSWPSQLLG*