GBrowse Details

Vigan.01G461800.01

Basic Information:
Name: Vigan.01G461800.01
Multiple alignment
Variant Information
Position: Chr01:59125219..59127241 (+ strand)
Length: 2023
Functional Information:
Description: Similar to Uncharacterized protein. [I1MTS6, Glycine max]
InterPro: TB2/DP1/HVA22-related protein (IPR004345)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.54,26.65,24.18,10.00,48.29,65.98,21.32,20.34
Arabidopsis thaliana homolog: AT1G74520.1
Automatic updates:
Name: NM_001250217 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306331 (LOC100306331), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:59125219..59125607 (+ strand)
Length: 389
Type: five_prime_UTR
Position: Chr01:59125608..59125669 (+ strand)
Length: 62
Type: CDS
Position: Chr01:59125765..59125791 (+ strand)
Length: 27
Type: CDS
Position: Chr01:59125944..59126066 (+ strand)
Length: 123
Type: CDS
Position: Chr01:59126578..59126821 (+ strand)
Length: 244
Type: CDS
Position: Chr01:59126908..59126964 (+ strand)
Length: 57
Type: CDS
Position: Chr01:59126965..59127241 (+ strand)
Length: 277
Type: three_prime_UTR


>Vigan.01G461800.01
AGAAAACTTC ACTGGCAGAG GACCACGGTG TTCCGCAATC GATTCCAACC ACGACTGAAA TCGAGGTCGC TAATCGTAAT
ATACGGTGAT ATGCAGATAG TGTTATAGTA GTATCGGATA CACAGGAAAA CAACTTCCCA CAGCAATTCC ACTCTGTTCA
ATTATTCTCT TTTCTTGTTA CTTTCACCAC CGCTAGCTCT TGCTTTTTCT TCATCTGTCT GAATTCTTTT CTCTCACACG
CAACCCACAG TGCAAATTGC GCACACAGCA CTTCACACCC TCTTTTTCTT TTTTCCTCTT TCCGTGCCAG TGAGAATAGA
GAAGTGATCG AAGAAGCGCC ACTAAAAAAA GCTAAGCCCT CAATCGAAGC AATTACTCTA TACATCAAAA TGGGATCTGG
GGCTGGTAAT TTCCTCAAGG TGCTTCTCAG AAACTTCGAT GTCCTTGCCG GGCCTGTGGT TAGTCTTGTT TATCCTCTAT
ATGCTTCGAT TAGGGCAATT GAGACCAAGT CTCCTATTGA TGATCAGCAA TGGCTCACTT ACTGGGTTCT CTATTCCTTA
ATCACCCTCT TTGAACTTAC ATTTGCAAAA CTCCTTGAAT GGATTCCGAT ATGGCCTTAT GCAAAGCTGA TTGCAACCTG
CTGGTTGGTC CTTCCTTACT TTAGCGGTGC TGCTTATGTA TACGAGCATT ACGTGAGACC TATATATGTC AATCCTCAAA
CCATTAACAT TTGGTACGTT CCAAGGAAAA AGGATACCTT TGGTAAGCGA GATGACATTC TAACTGCTGC AGAGAAGTAC
ATCCAAGAGA ATGGAACTGA TGCATTTGAG AATCTGATCA ATAGGGCTGA TAAATCCAGA AGGGGTGGCG GTTATTATAC
AGCGTATGAT GAGACTTATT AACTGCAATC ATGTAATTTC TGTCTTTCGT GAGTGTACAT GTTACTCATA TTTTGTTTTA
CCCTCTCTGT GGCGATACTT TGACCTTTTT TTTTCAACCC TTTATCGAGT TATTATTATC CTGTAGCTAG CTTGGGATTA
GTCATCTATG TTTTGTATAA TGGCTGACAC CCATGGTATA TATAATGTTA GTTTAACAGC AGAAATTCGT TGATTTTGTT
TTTCCTTTTG TTACATTATG AACAAAATCA CACCAATGTT ATATAGGAAT GCAATTATG

>Vigan.01G461800.01
ATGGGATCTG GGGCTGGTAA TTTCCTCAAG GTGCTTCTCA GAAACTTCGA TGTCCTTGCC GGGCCTGTGG TTAGTCTTGT
TTATCCTCTA TATGCTTCGA TTAGGGCAAT TGAGACCAAG TCTCCTATTG ATGATCAGCA ATGGCTCACT TACTGGGTTC
TCTATTCCTT AATCACCCTC TTTGAACTTA CATTTGCAAA ACTCCTTGAA TGGATTCCGA TATGGCCTTA TGCAAAGCTG
ATTGCAACCT GCTGGTTGGT CCTTCCTTAC TTTAGCGGTG CTGCTTATGT ATACGAGCAT TACGTGAGAC CTATATATGT
CAATCCTCAA ACCATTAACA TTTGGTACGT TCCAAGGAAA AAGGATACCT TTGGTAAGCG AGATGACATT CTAACTGCTG
CAGAGAAGTA CATCCAAGAG AATGGAACTG ATGCATTTGA GAATCTGATC AATAGGGCTG ATAAATCCAG AAGGGGTGGC
GGTTATTATA CAGCGTATGA TGAGACTTAT TAA

>Vigan.01G461800.01
MGSGAGNFLK VLLRNFDVLA GPVVSLVYPL YASIRAIETK SPIDDQQWLT YWVLYSLITL FELTFAKLLE WIPIWPYAKL
IATCWLVLPY FSGAAYVYEH YVRPIYVNPQ TINIWYVPRK KDTFGKRDDI LTAAEKYIQE NGTDAFENLI NRADKSRRGG
GYYTAYDETY *