GBrowse Details

Vigan.01G469400.01

Basic Information:
Name: Vigan.01G469400.01
Multiple alignment
Variant Information
Position: Chr01:59873071..59875588 (+ strand)
Length: 2518
Functional Information:
Description: Similar to Senescence-associated protein. [T2DNZ7, Phaseolus vulgaris]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Tetraspanin, conserved site (IPR018503)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:153.14,11.27,35.44,28.05,15.86,96.47,24.21,16.51
Arabidopsis thaliana homolog: AT2G23810.1
Automatic updates:
Name: NM_001317468 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tetraspanin family protein (LOC100819507), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:59873071..59873258 (+ strand)
Length: 188
Type: five_prime_UTR
Position: Chr01:59873259..59873765 (+ strand)
Length: 507
Type: CDS
Position: Chr01:59874976..59875272 (+ strand)
Length: 297
Type: CDS
Position: Chr01:59875273..59875588 (+ strand)
Length: 316
Type: three_prime_UTR


>Vigan.01G469400.01
CGGCGAAATC GCGTGAACAG TGGCGTGTGC AAATAAGATC CGGAATTGTC AAACAGTTAG AACTCACAAC AAACATGACG
CGCACACAAA CACATATATA CGCGCCCACA CACAAATAAA CCTTCACCAC CTTCACTCTC AAATACTCCT TACACAACAA
TCATTATTCC CCAAACACTT TCTTCACCAT GGTTCGCTTC AGCAACAACA TTATCGGACT CCTCAATTTC CTCACCTTCC
TCCTCTCCAT CCCGATCCTG GGGGGCGGAG TGTGGCTCAG CAAGCACGCC AGCACCGAGT GCGATCGGTG GCTGGAGAAG
CCGGTGATCG CAATCGGTGT TTTCCTGTTG GTTGTTTCAC TCGCTGGCCT CATCGGCGCG TGCTGTCGCG TGACATGGCT
ACTCTGGGTC TACCTGCTCG TGATGTTCTT GCTCATCGTT ATTCTCTTCG CCTTCACCAT CTTCGCCTTC GTTGTCACCA
ACAAGGGCGC TGGTGAGGCC GTGTCTAAGA GAGGCTATAA GGAGTATAGG CTCGGGGATT ACTCCAATTG GTTGCAGAAA
AGGGTGAACA ACCCTAAGAC GTGGAACAGG ATCAAGAGTT GCTTACAGTC TGGGAAAGTC TGTACTGAAT TCCAAAACAA
GTTCCTAAAC GACACCTTTC CTGACTTCTA CACCGAGAAC CTCTCCGCGC TTCAGTCCGG TTGTTGTAAG CCTGCTGATG
AGTGCAATTT TACCTATGTG AATCCAACTA CATGGACAAA GACCGCAAAT GCTACTCTGA ACAACCCTGA TTGTACTACT
TGGGATAACG ATCCCAACAT TCTGTGCTTC GATTGCCAAT CATGCAAGGC TGGCTTACTG CAAAACCTGA AGACTGATTG
GAAGAAGGTG GCTGTTATTA ACATCGTAGT CCTGGTCTTC CTCGTTATTG TCTACTCCAT AGGTTGTTGT GCTTTCAGGA
ATAACAGGCA GGAGAATTGG AAGAGATATT AGTTAGGTTC ATTTGATTAT TCACTTATTA CTATTCTATT ACCCTGTTCA
TGAATGTGCT AGGCAATTTG GTTTATATGC TTGATTTTTT ACTTTTTAGT GAGTTTTATA AAATGCTGGA TTATACTATT
TTAAGCACAG ACTATTGTGT AAATTGCTCA GTTTTTTTTA TCGCATTTCT TAGTAACATC TGTACGTAGA TATTACTTTT
GGACACTGCA TTCCCTTCTG CTGCAACATT CTCATAATGT AGTGGCAACA ACTGAATCTT CACCCTCTAC ATCATTCATG
GTTTAAAGTA GTTTTTTATT TAGTTTAA

>Vigan.01G469400.01
ATGGTTCGCT TCAGCAACAA CATTATCGGA CTCCTCAATT TCCTCACCTT CCTCCTCTCC ATCCCGATCC TGGGGGGCGG
AGTGTGGCTC AGCAAGCACG CCAGCACCGA GTGCGATCGG TGGCTGGAGA AGCCGGTGAT CGCAATCGGT GTTTTCCTGT
TGGTTGTTTC ACTCGCTGGC CTCATCGGCG CGTGCTGTCG CGTGACATGG CTACTCTGGG TCTACCTGCT CGTGATGTTC
TTGCTCATCG TTATTCTCTT CGCCTTCACC ATCTTCGCCT TCGTTGTCAC CAACAAGGGC GCTGGTGAGG CCGTGTCTAA
GAGAGGCTAT AAGGAGTATA GGCTCGGGGA TTACTCCAAT TGGTTGCAGA AAAGGGTGAA CAACCCTAAG ACGTGGAACA
GGATCAAGAG TTGCTTACAG TCTGGGAAAG TCTGTACTGA ATTCCAAAAC AAGTTCCTAA ACGACACCTT TCCTGACTTC
TACACCGAGA ACCTCTCCGC GCTTCAGTCC GGTTGTTGTA AGCCTGCTGA TGAGTGCAAT TTTACCTATG TGAATCCAAC
TACATGGACA AAGACCGCAA ATGCTACTCT GAACAACCCT GATTGTACTA CTTGGGATAA CGATCCCAAC ATTCTGTGCT
TCGATTGCCA ATCATGCAAG GCTGGCTTAC TGCAAAACCT GAAGACTGAT TGGAAGAAGG TGGCTGTTAT TAACATCGTA
GTCCTGGTCT TCCTCGTTAT TGTCTACTCC ATAGGTTGTT GTGCTTTCAG GAATAACAGG CAGGAGAATT GGAAGAGATA
TTAG

>Vigan.01G469400.01
MVRFSNNIIG LLNFLTFLLS IPILGGGVWL SKHASTECDR WLEKPVIAIG VFLLVVSLAG LIGACCRVTW LLWVYLLVMF
LLIVILFAFT IFAFVVTNKG AGEAVSKRGY KEYRLGDYSN WLQKRVNNPK TWNRIKSCLQ SGKVCTEFQN KFLNDTFPDF
YTENLSALQS GCCKPADECN FTYVNPTTWT KTANATLNNP DCTTWDNDPN ILCFDCQSCK AGLLQNLKTD WKKVAVINIV
VLVFLVIVYS IGCCAFRNNR QENWKRY*