GBrowse Details

Vigan.01G470300.01

Basic Information:
Name: Vigan.01G470300.01
Multiple alignment
Variant Information
Position: Chr01:59969771..59972904 (+ strand)
Length: 3134
Functional Information:
Description: Similar to Double-strand-break repair protein rad21. [XP_007013976.1, Theobroma cacao]
InterPro: Domain of unknown function DUF828 (IPR008546)
Pleckstrin-like, plant (IPR013666)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.02,2.82,0.75,9.47,0.09,13.23,1.54
Arabidopsis thaliana homolog: AT5G57770.1
Automatic updates:
Name: NM_001255604 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin canalisation and PH-like domain-containing protein (LOC100807586), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:59969771..59969871 (+ strand)
Length: 101
Type: five_prime_UTR
Position: Chr01:59969872..59970057 (+ strand)
Length: 186
Type: CDS
Position: Chr01:59970266..59970337 (+ strand)
Length: 72
Type: CDS
Position: Chr01:59970434..59970502 (+ strand)
Length: 69
Type: CDS
Position: Chr01:59970644..59971001 (+ strand)
Length: 358
Type: CDS
Position: Chr01:59971425..59971592 (+ strand)
Length: 168
Type: CDS
Position: Chr01:59971730..59971779 (+ strand)
Length: 50
Type: CDS
Position: Chr01:59972160..59972208 (+ strand)
Length: 49
Type: CDS
Position: Chr01:59972305..59972516 (+ strand)
Length: 212
Type: CDS
Position: Chr01:59972517..59972904 (+ strand)
Length: 388
Type: three_prime_UTR


>Vigan.01G470300.01
ATTTATTCAT ATTTCAAAAC CGCGTAGCTG GATACTCTCA TCTTCTTCAA CTCATTTCCT AGATATATAT AGTTTTGGTT
GTGAAAATTG ATCATATTAG AATGGCTTCC GATTTTAATC TATCCCCTTC AGATGCACAT CCCGAGACTA TGGATTTCCT
TTCTCTTGCA TGGTGTAACT TCGCTGTGCA AGCTCTGCAG CCTGAGCCTC AACATGGATC TGTTGTTCTG CTTGATAATA
ACTCCATGAA GCAATTAGAG CCTGGTAGCC CAAATGTTAA TCCTTCGATG GAAAAGAGTG CTAGAGTGGA CGGTGCTGAT
TTCGGGTCTT TGCCAGGATG GAAATCTAAT AATGTAAAGT CATGGATATG GATGCAGCAA GCGATGCATC CTGAATTGAA
TTACAACAGC TGTTTCCGAA AGAAATGGGT GCCATGGAAG CAGATCATAC CACTGAAAAG TGTTTCAATA AAGAAATGGT
TCAAGGAAAT AAAGATGAAG AAAAAAGAAG ACCAGAGATT GCAAAGAGCA GAGGTGCATG CAGCGATATC AATTGCAGGG
GTTGCAGCAG CTTTAGCTGC CATTGCTGCT GAAAATTCGA AAAAGGAATC AAATCAAGAC AGAGATGCAG CAGTGGCCTC
TGCGGCTGCC TTGGTAGCTG CACAGTGTGC AAAAGTAGCT GAAGCAATGG GGGCAAAGAA AGAACAGCTT AGCAGTATAA
TTGGCTCAGC CATGAGTGGC ACAAGTGCAA GTGATATCCT AACTCTCACT GCCGCAGCTG CAACATCATT AAAAGGAGCA
GCCACACTTA AAGTAAGATC AGGTTGCAAG AACAGACTGA ATGGTGGAGT TCCTGTCTTG CCCCTTGAAG ACAGCAATGA
TCTTGATTTT GACTTTGAGA AAGGCAGATC AATTCTTGCA CAGGGAGCTG AGTTATATGT AGAAACACCA GAAGGGAAGT
ACATGCCGAG ATCAGTATCT GTAATCCTAA GCAGCGAAGC CAAGGTTGTA CTTATGATGA GGAAGCATAA TCTATTCAAA
AGCAAGAAGG AGGGAATTGT AATGACTCTG CACGCAGAAC TGTACAAAGG TTCAGACGCA GAGGATGCTG ATACATGTTA
TCTGATTGTC TTGACAACAA GAGGAGGCGT TTTCAAGCTA GACATGGCGG ATGATTACCG TCGTTACAAA ACATGGTCCA
CAACCATCAA TCATATGCTG AAGATTTCAG CTTCTTTTGC AAAATATGAG CTTCAGTTTT ACTGAAATAA CTGCTGTCAC
CACTTACCTT ATGTACTCGT TTTGCTTCCT GTACCCTACA TACATTTGTA ACTATTACAA AATATCGTCC CTACTGTTAA
ATTCCAATTA TCTGTTATAT CTGTGTAAAA TAATTTGTAT ATAACAAGGG TAGGGTACTG TCATTATACT ATATACTTGA
ATTTGAAAGA GCATGCTTAA TGAACAATAT ATTATGAATA CAAAATGTGT GTTAAAAGTG AACTTTAAAT CGACTTGCAA
AAAATATATG TCTAAAATCT CATTTTATTA TGGCTTTAAG ACACGCTTTG AGTGATATGT GTGAAGAAAT AATGTTGTGG
GGTGGCACCT TTTCCTGAGA CAGGGCCAAC CGGCTAACTG GTATCTTCTT TTT

>Vigan.01G470300.01
ATGGCTTCCG ATTTTAATCT ATCCCCTTCA GATGCACATC CCGAGACTAT GGATTTCCTT TCTCTTGCAT GGTGTAACTT
CGCTGTGCAA GCTCTGCAGC CTGAGCCTCA ACATGGATCT GTTGTTCTGC TTGATAATAA CTCCATGAAG CAATTAGAGC
CTGGTAGCCC AAATGTTAAT CCTTCGATGG AAAAGAGTGC TAGAGTGGAC GGTGCTGATT TCGGGTCTTT GCCAGGATGG
AAATCTAATA ATGTAAAGTC ATGGATATGG ATGCAGCAAG CGATGCATCC TGAATTGAAT TACAACAGCT GTTTCCGAAA
GAAATGGGTG CCATGGAAGC AGATCATACC ACTGAAAAGT GTTTCAATAA AGAAATGGTT CAAGGAAATA AAGATGAAGA
AAAAAGAAGA CCAGAGATTG CAAAGAGCAG AGGTGCATGC AGCGATATCA ATTGCAGGGG TTGCAGCAGC TTTAGCTGCC
ATTGCTGCTG AAAATTCGAA AAAGGAATCA AATCAAGACA GAGATGCAGC AGTGGCCTCT GCGGCTGCCT TGGTAGCTGC
ACAGTGTGCA AAAGTAGCTG AAGCAATGGG GGCAAAGAAA GAACAGCTTA GCAGTATAAT TGGCTCAGCC ATGAGTGGCA
CAAGTGCAAG TGATATCCTA ACTCTCACTG CCGCAGCTGC AACATCATTA AAAGGAGCAG CCACACTTAA AGTAAGATCA
GGTTGCAAGA ACAGACTGAA TGGTGGAGTT CCTGTCTTGC CCCTTGAAGA CAGCAATGAT CTTGATTTTG ACTTTGAGAA
AGGCAGATCA ATTCTTGCAC AGGGAGCTGA GTTATATGTA GAAACACCAG AAGGGAAGTA CATGCCGAGA TCAGTATCTG
TAATCCTAAG CAGCGAAGCC AAGGTTGTAC TTATGATGAG GAAGCATAAT CTATTCAAAA GCAAGAAGGA GGGAATTGTA
ATGACTCTGC ACGCAGAACT GTACAAAGGT TCAGACGCAG AGGATGCTGA TACATGTTAT CTGATTGTCT TGACAACAAG
AGGAGGCGTT TTCAAGCTAG ACATGGCGGA TGATTACCGT CGTTACAAAA CATGGTCCAC AACCATCAAT CATATGCTGA
AGATTTCAGC TTCTTTTGCA AAATATGAGC TTCAGTTTTA CTGA

>Vigan.01G470300.01
MASDFNLSPS DAHPETMDFL SLAWCNFAVQ ALQPEPQHGS VVLLDNNSMK QLEPGSPNVN PSMEKSARVD GADFGSLPGW
KSNNVKSWIW MQQAMHPELN YNSCFRKKWV PWKQIIPLKS VSIKKWFKEI KMKKKEDQRL QRAEVHAAIS IAGVAAALAA
IAAENSKKES NQDRDAAVAS AAALVAAQCA KVAEAMGAKK EQLSSIIGSA MSGTSASDIL TLTAAAATSL KGAATLKVRS
GCKNRLNGGV PVLPLEDSND LDFDFEKGRS ILAQGAELYV ETPEGKYMPR SVSVILSSEA KVVLMMRKHN LFKSKKEGIV
MTLHAELYKG SDAEDADTCY LIVLTTRGGV FKLDMADDYR RYKTWSTTIN HMLKISASFA KYELQFY*