GBrowse Details

Vigan.01G471800.01

Basic Information:
Name: Vigan.01G471800.01
Multiple alignment
Variant Information
Position: Chr01:60151230..60157760 (+ strand)
Length: 6531
Functional Information:
Description: Similar to tRNA (adenine(37)-N6)-methyltransferase-like isoform X1. [XP_004507807.1, Cicer arietinum]
InterPro: Uncharacterised domain UPF0066 (IPR001378)
TsaA-like domain (IPR023370)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.54,14.86,3.31,2.86,4.36,3.59,3.53,4.61
Arabidopsis thaliana homolog: AT4G28020.1
Automatic updates:
Name: NM_001255673 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100812211 (LOC100812211), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60151230..60151291 (+ strand)
Length: 62
Type: five_prime_UTR
Position: Chr01:60151292..60151370 (+ strand)
Length: 79
Type: CDS
Position: Chr01:60151445..60151566 (+ strand)
Length: 122
Type: CDS
Position: Chr01:60151640..60151942 (+ strand)
Length: 303
Type: CDS
Position: Chr01:60152345..60152437 (+ strand)
Length: 93
Type: CDS
Position: Chr01:60153191..60153250 (+ strand)
Length: 60
Type: CDS
Position: Chr01:60153393..60153467 (+ strand)
Length: 75
Type: CDS
Position: Chr01:60153811..60153891 (+ strand)
Length: 81
Type: CDS
Position: Chr01:60157301..60157669 (+ strand)
Length: 369
Type: CDS
Position: Chr01:60157670..60157760 (+ strand)
Length: 91
Type: three_prime_UTR


>Vigan.01G471800.01
TATAACTACA GATGTAGGAG TAGGAATGAA GCGATTTTAC TTCGAGCCGA AGCTGGTTAG TGATGCGCGG CAACATTTCA
GAAACAAAAT GGTTGACAGT GACCGCCATA ACCTTCACAC TCACAGCCAT TTCCATCTCT GCCTACGCAT TAAAGAGAAA
ATGGAACCAT ATGAGCTCCA AGATCGAGGA GCTCGAGGCA TCTCTGAAAT CCTGCTCTGA GAAATGTGCC TCCGAAAGGC
AAGGGCGAAT CAGGGCTCAA CAGGCTTTGA GAGAAGAAGT TACAAAGTCG CAACCTAAGT CTGAAAACCT AAACCTCACC
TGTTATCCCA TGATGCCAAT CGGTACCGTC CACTCCTGCT TCTCCACCAG GAACGGGACG CCGAGGCAAC CGTTACTCGT
GCCACTTGCT AGGGCGTGTT TGGTTTTTAA CACTACTCGC GTTCCACCGG CGTCGCTCGA GGGTTTGGAG GAATATTCTC
ATTGTTGGAT TCTGTATGTT TTTCACTTAA ATACGGATAT TGATAAGCTG TGGAAGCATC CGTCTAAATC AGGGTTCAAG
GCCAAGGTGA GGGTTCCGAG ACTGAAGGGT GGAAGAAAGG GAGTGTTTGC CACACGATCC CCACACCGTC CATGCCCCAT
CGGACTCACA GTTGCAAAGG TAGAGGCTGT ACAGGGAAAT ATGGTTTTGC TCTCGGGTGT GGATCTGGTT GATGGAACTC
CAGTGCTAGA TCTCAAGCCT TACATACCAT ATTGTGACAG CATCCGAGAA GCTACAGTGC CAAATTGGTT GACAGATGAT
AACTTGCTTT CTGTAGCTTC TATTAGCTTT TCGGAGGACT TCACTTCAGC TCTCGAAAAT TGCTGGATAG TGGCGGAAAA
GAAGTCATTG TATGCATCAC CAGGTGAGTT CCAAAGCTTG ATAAAGCAGG TTCTTTCATG GGATATTCGG TCATTGAGTC
AACGCAATCG GCCACATGAT GCATTACTTA AGAATGAAAA CGATGAACTA TTGGGTAATG CTTCTGATGT AGATGACCAC
GAAAATGAAA CAGTAGTCCA TGAAAGAGAG CAGAATGCTA TATATTCCAG TAAAATCATT TATCACCTGA TTTTGGAGGG
ACTTGATGTC TCTTACAGAA TTGATCATGT CGGTCATGTC ATAGTAGATA ATGTATCACA TGCTGTGCAG GATAATAAGC
GTAGTTTCTT TAATTACTTG GCATGGAAAG GCAAGATGCA ATGATTTCTT TTATTCTACC CGATTACTTG TTAAGCTATT
TTAATTAATA TTTTTCTTTT TCAAAAAAAT GTTTTTGCCC TTTTGTTACT AGTAA

>Vigan.01G471800.01
ATGCGCGGCA ACATTTCAGA AACAAAATGG TTGACAGTGA CCGCCATAAC CTTCACACTC ACAGCCATTT CCATCTCTGC
CTACGCATTA AAGAGAAAAT GGAACCATAT GAGCTCCAAG ATCGAGGAGC TCGAGGCATC TCTGAAATCC TGCTCTGAGA
AATGTGCCTC CGAAAGGCAA GGGCGAATCA GGGCTCAACA GGCTTTGAGA GAAGAAGTTA CAAAGTCGCA ACCTAAGTCT
GAAAACCTAA ACCTCACCTG TTATCCCATG ATGCCAATCG GTACCGTCCA CTCCTGCTTC TCCACCAGGA ACGGGACGCC
GAGGCAACCG TTACTCGTGC CACTTGCTAG GGCGTGTTTG GTTTTTAACA CTACTCGCGT TCCACCGGCG TCGCTCGAGG
GTTTGGAGGA ATATTCTCAT TGTTGGATTC TGTATGTTTT TCACTTAAAT ACGGATATTG ATAAGCTGTG GAAGCATCCG
TCTAAATCAG GGTTCAAGGC CAAGGTGAGG GTTCCGAGAC TGAAGGGTGG AAGAAAGGGA GTGTTTGCCA CACGATCCCC
ACACCGTCCA TGCCCCATCG GACTCACAGT TGCAAAGGTA GAGGCTGTAC AGGGAAATAT GGTTTTGCTC TCGGGTGTGG
ATCTGGTTGA TGGAACTCCA GTGCTAGATC TCAAGCCTTA CATACCATAT TGTGACAGCA TCCGAGAAGC TACAGTGCCA
AATTGGTTGA CAGATGATAA CTTGCTTTCT GTAGCTTCTA TTAGCTTTTC GGAGGACTTC ACTTCAGCTC TCGAAAATTG
CTGGATAGTG GCGGAAAAGA AGTCATTGTA TGCATCACCA GGTGAGTTCC AAAGCTTGAT AAAGCAGGTT CTTTCATGGG
ATATTCGGTC ATTGAGTCAA CGCAATCGGC CACATGATGC ATTACTTAAG AATGAAAACG ATGAACTATT GGGTAATGCT
TCTGATGTAG ATGACCACGA AAATGAAACA GTAGTCCATG AAAGAGAGCA GAATGCTATA TATTCCAGTA AAATCATTTA
TCACCTGATT TTGGAGGGAC TTGATGTCTC TTACAGAATT GATCATGTCG GTCATGTCAT AGTAGATAAT GTATCACATG
CTGTGCAGGA TAATAAGCGT AGTTTCTTTA ATTACTTGGC ATGGAAAGGC AAGATGCAAT GA

>Vigan.01G471800.01
MRGNISETKW LTVTAITFTL TAISISAYAL KRKWNHMSSK IEELEASLKS CSEKCASERQ GRIRAQQALR EEVTKSQPKS
ENLNLTCYPM MPIGTVHSCF STRNGTPRQP LLVPLARACL VFNTTRVPPA SLEGLEEYSH CWILYVFHLN TDIDKLWKHP
SKSGFKAKVR VPRLKGGRKG VFATRSPHRP CPIGLTVAKV EAVQGNMVLL SGVDLVDGTP VLDLKPYIPY CDSIREATVP
NWLTDDNLLS VASISFSEDF TSALENCWIV AEKKSLYASP GEFQSLIKQV LSWDIRSLSQ RNRPHDALLK NENDELLGNA
SDVDDHENET VVHEREQNAI YSSKIIYHLI LEGLDVSYRI DHVGHVIVDN VSHAVQDNKR SFFNYLAWKG KMQ*