GBrowse Details

Vigan.01G476400.01

Basic Information:
Name: Vigan.01G476400.01
Multiple alignment
Variant Information
Position: Chr01:60529117..60530780 (+ strand)
Length: 1664
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [V7C9G8, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Glycoside hydrolase, family 16, active site (IPR008263)
Beta-glucanase (IPR008264)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.42,2.21,1.04,0.60,11.49,5.77,23.18,0.18
Automatic updates:
Name: NM_001255019 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 23-like (LOC100800017), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60529117..60529416 (+ strand)
Length: 300
Type: five_prime_UTR
Position: Chr01:60529417..60529701 (+ strand)
Length: 285
Type: CDS
Position: Chr01:60529829..60530022 (+ strand)
Length: 194
Type: CDS
Position: Chr01:60530131..60530530 (+ strand)
Length: 400
Type: CDS
Position: Chr01:60530531..60530780 (+ strand)
Length: 250
Type: three_prime_UTR


>Vigan.01G476400.01
CATGAACCCA GGTTTGATTT GGTGGAACAA ACCTAGGAAC TCATAGCCTC TGCGCCGAAT GTGTAAAATA AAAGAAGCAC
CACGTAATGG ACCACTACAA ACTATGATCA TTGTGCTAAT GAAACTTACT GCTCTACAGC TGTTGAATTC CCACATCATC
CCACCAACCA ACTTTCATTA TTCAAACACA TCCCCAAGCT TCCACAATCC CCATACACTA GTATAAATTG GAGGACGGAA
CCAATTTGCC TACTCATCAC TTCTGTCTTA CATACTATTA CATTAATCAC AAGCTCTGCA ATGGTTGTTT TCTCTCACGT
CAAGACAATG GTTGCCTTTG TCCTGGCCTT CCTTATTTCT GTGCCTTCCA TGGTTGCCTA TGCCGCCAAT CTGTACCAAG
ATGTTGATGT CACTTGGGGA AATGGCAGGG GTAAGATTCT GAACAATGGT CAGCTTCTTA CTCTGTCCCT TGACAGTGCC
TCTGGCTCTG GCTTTCAGTC CAAGAACCAG TATCTCTATG GAAAGATTGA CATGCAAATC AAACTTGTCC CTGGAAATTC
CGCTGGCACA GTCACCGCTT ATTACTTGCG TTCAGAAGGG TCATCTTGGG ATGAGATAGA CTTTGAGTTC CTGGGAAATC
TGAGCGGTGA CCCTTACATT GTTCATACTA ATGTGTACAC ACAAGGCAAG GGTAACAGAG AGCAGCAATT CTATCTCTGG
TTTGACCCAA CTGCAGATTT CCACACATAT TCCTTTCTCT GGAATCCTGC ACACGTTGTA TTCTATGTAG ATGGTAGACC
AATTAGGGAG TTCAAGAACT TGGAGGGTGC GGGTGTTGAA TACCCAAAGA AGCAACCTAT GAGGCTATAT TCAAGCCTAT
GGAACGCTGA TGATTGGGCA ACAAGAGGAG GACTTGTGAA GACCGATTGG AGCCAAGCCC CATTCACTGC ATCATTCAGG
AACTTGAGAG TGAATGGATG CGTTTGGTCG AATGGAGCTT CTTCATGCAA ATCGGGCTCT TCTGATAAAA CTTGGCTATC
TCAACAGCTT GATGCCACAA ACCAGAAGAT GCTAAAATGG GTGCAGAAGA ATTACATGAT TTACAATTAC TGCACAGACA
TAAAACGATT CCCTCTGGGT CTCCCTCTGG AATGCACAGT TCGAACCAAG TCATCATAAG AATACAATCA CTGCTCTTGC
ATATATGTGT GTGTGTCTAT GTCATTCTTT CTGCAATTAA TTTGAACTCT GAGGACGTGT TATGTAATCA TTTTTATTAA
AATAGAAAAT AAATAAAGTG GGTATTTATT TTTAGCAATA AAAGCATTTT CTGGGAGTTT TAAACTTAGA CCAACCAACA
CTCCTCTTAC TTTTAGTGTT AGGGAATCAT GAGGCATGAA TTATAAACAC TTGTGCTTTT GTTATAAAC

>Vigan.01G476400.01
ATGGTTGTTT TCTCTCACGT CAAGACAATG GTTGCCTTTG TCCTGGCCTT CCTTATTTCT GTGCCTTCCA TGGTTGCCTA
TGCCGCCAAT CTGTACCAAG ATGTTGATGT CACTTGGGGA AATGGCAGGG GTAAGATTCT GAACAATGGT CAGCTTCTTA
CTCTGTCCCT TGACAGTGCC TCTGGCTCTG GCTTTCAGTC CAAGAACCAG TATCTCTATG GAAAGATTGA CATGCAAATC
AAACTTGTCC CTGGAAATTC CGCTGGCACA GTCACCGCTT ATTACTTGCG TTCAGAAGGG TCATCTTGGG ATGAGATAGA
CTTTGAGTTC CTGGGAAATC TGAGCGGTGA CCCTTACATT GTTCATACTA ATGTGTACAC ACAAGGCAAG GGTAACAGAG
AGCAGCAATT CTATCTCTGG TTTGACCCAA CTGCAGATTT CCACACATAT TCCTTTCTCT GGAATCCTGC ACACGTTGTA
TTCTATGTAG ATGGTAGACC AATTAGGGAG TTCAAGAACT TGGAGGGTGC GGGTGTTGAA TACCCAAAGA AGCAACCTAT
GAGGCTATAT TCAAGCCTAT GGAACGCTGA TGATTGGGCA ACAAGAGGAG GACTTGTGAA GACCGATTGG AGCCAAGCCC
CATTCACTGC ATCATTCAGG AACTTGAGAG TGAATGGATG CGTTTGGTCG AATGGAGCTT CTTCATGCAA ATCGGGCTCT
TCTGATAAAA CTTGGCTATC TCAACAGCTT GATGCCACAA ACCAGAAGAT GCTAAAATGG GTGCAGAAGA ATTACATGAT
TTACAATTAC TGCACAGACA TAAAACGATT CCCTCTGGGT CTCCCTCTGG AATGCACAGT TCGAACCAAG TCATCATAA

>Vigan.01G476400.01
MVVFSHVKTM VAFVLAFLIS VPSMVAYAAN LYQDVDVTWG NGRGKILNNG QLLTLSLDSA SGSGFQSKNQ YLYGKIDMQI
KLVPGNSAGT VTAYYLRSEG SSWDEIDFEF LGNLSGDPYI VHTNVYTQGK GNREQQFYLW FDPTADFHTY SFLWNPAHVV
FYVDGRPIRE FKNLEGAGVE YPKKQPMRLY SSLWNADDWA TRGGLVKTDW SQAPFTASFR NLRVNGCVWS NGASSCKSGS
SDKTWLSQQL DATNQKMLKW VQKNYMIYNY CTDIKRFPLG LPLECTVRTK SS*