GBrowse Details

Vigan.01G478700.01

Basic Information:
Name: Vigan.01G478700.01
Multiple alignment
Variant Information
Position: Chr01:60747098..60752691 (+ strand)
Length: 5594
Functional Information:
Description: Similar to pseudouridine-5'-monophosphatase-like. [XP_004507854.1, Cicer arietinum]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: hydrolase activity (GO:0016787)
InterPro: HAD hydrolase, subfamily IA (IPR006439)
HAD-like domain (IPR023214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.82,22.14,11.51,18.22,31.97,15.97,16.04
Arabidopsis thaliana homolog: AT5G57440.1
Automatic updates:
Name: NM_001255961 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pseudouridine-5'-monophosphatase-like (LOC100786174), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60747098..60747263 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr01:60747264..60747342 (+ strand)
Length: 79
Type: CDS
Position: Chr01:60747513..60747737 (+ strand)
Length: 225
Type: CDS
Position: Chr01:60750595..60750655 (+ strand)
Length: 61
Type: CDS
Position: Chr01:60750827..60750974 (+ strand)
Length: 148
Type: CDS
Position: Chr01:60751162..60751241 (+ strand)
Length: 80
Type: CDS
Position: Chr01:60752288..60752420 (+ strand)
Length: 133
Type: CDS
Position: Chr01:60752421..60752691 (+ strand)
Length: 271
Type: three_prime_UTR


>Vigan.01G478700.01
TGAAAAACTA AACTCTGAAT AAATAGTTGG TCAGAATTTG ATTCCCGGAA TAACAAAAAT TGAGATATTC CTATAGAAAG
CAAATCAGGA ATCACGATTT GAAACAGGGG TTGTAGATCG GAAGCTGGAG AAGAAGTTTG CACTGTTCCT TCAGCTTTTT
CGAACAATGG CCAATCTTTC GGGTGCAGTC TCTGTTAGAA AGCCAATCAC CCACGTCATT TTCGACATGG ACGGTCTCTT
GCTCGACACT GAGAAGTTCT ATACACAAGT CCAGGAAATG ATACTTGCTA GATACAACAA AACCTTTGAT TGGACCCTGA
AGGCAAAGAT GATGGGAAAG AAAGCAATAG AATCTGCTAG GATCTTTGTT GAAGAGACTG GAATTAGCAA TTCGCTTAGT
CCTGAGCAGT TTCTTGCAGA AAGAGAGGAT ATGCTGCAGT CTTTGTTTCC CACAAGTGAT CTTATGCCAG GTGCCAGCCG
TTTAGTCAAA CATCTACATG CAAACGGAGT TCCAATTGCT GTGGCAACTG GTTCTCACAG GCGACATTTT GAATTGAAAA
CTCAAAGACA TCATGAAATC TTCTCTTTGA TGCATCATAT TGTCCTTGGT GATGATCCAG AAGTTAAACA AGGGAAACCT
TCTCCGGATG GATTTCTTGC AGCAGCTAAG AGATTCGAGG GTGGACCAGT TGATCCTTGT AACGTTCTTG TTTTTGAAGA
TGCACCCGCA GGTGTTCTTG CTGCTAAAAA TGCTGGAATG TCTGCTGTTA TGGTCCCTGA TCCAAGGCTG GACAAATCAT
TTCACGATGC AGCAGACCAA GTTTTGAACT CACTGTTGGA TTTCAACCCT AGTGAGTGGG CTTTACCTCC TTTTGAAGAT
AATGCTAGCT AGCTAGCTGA ACTTAGTTTT CTCTTACTTG CCGTCCATTT TTACAGCGAA CAGAAAAGGC TGCATTTGTT
TTGTACAACT AAATGACGAG TAATTAATCC ATTCTCATAG ATTATAGAAC CTTTATGTTA TTGTTCTGTG TGAATTACTA
AATCAATATC GATTTGTGAG ATCGTGAAAG TCGACATCAT TTGCATATTT CTCTCGTGGC ATGAAGCGTA AAACGTGATT
GATTCGGTTT ATTTAGAACG AGTACTTCTC CGTTGTTGTT TCA

>Vigan.01G478700.01
ATGGCCAATC TTTCGGGTGC AGTCTCTGTT AGAAAGCCAA TCACCCACGT CATTTTCGAC ATGGACGGTC TCTTGCTCGA
CACTGAGAAG TTCTATACAC AAGTCCAGGA AATGATACTT GCTAGATACA ACAAAACCTT TGATTGGACC CTGAAGGCAA
AGATGATGGG AAAGAAAGCA ATAGAATCTG CTAGGATCTT TGTTGAAGAG ACTGGAATTA GCAATTCGCT TAGTCCTGAG
CAGTTTCTTG CAGAAAGAGA GGATATGCTG CAGTCTTTGT TTCCCACAAG TGATCTTATG CCAGGTGCCA GCCGTTTAGT
CAAACATCTA CATGCAAACG GAGTTCCAAT TGCTGTGGCA ACTGGTTCTC ACAGGCGACA TTTTGAATTG AAAACTCAAA
GACATCATGA AATCTTCTCT TTGATGCATC ATATTGTCCT TGGTGATGAT CCAGAAGTTA AACAAGGGAA ACCTTCTCCG
GATGGATTTC TTGCAGCAGC TAAGAGATTC GAGGGTGGAC CAGTTGATCC TTGTAACGTT CTTGTTTTTG AAGATGCACC
CGCAGGTGTT CTTGCTGCTA AAAATGCTGG AATGTCTGCT GTTATGGTCC CTGATCCAAG GCTGGACAAA TCATTTCACG
ATGCAGCAGA CCAAGTTTTG AACTCACTGT TGGATTTCAA CCCTAGTGAG TGGGCTTTAC CTCCTTTTGA AGATAATGCT
AGCTAG

>Vigan.01G478700.01
MANLSGAVSV RKPITHVIFD MDGLLLDTEK FYTQVQEMIL ARYNKTFDWT LKAKMMGKKA IESARIFVEE TGISNSLSPE
QFLAEREDML QSLFPTSDLM PGASRLVKHL HANGVPIAVA TGSHRRHFEL KTQRHHEIFS LMHHIVLGDD PEVKQGKPSP
DGFLAAAKRF EGGPVDPCNV LVFEDAPAGV LAAKNAGMSA VMVPDPRLDK SFHDAADQVL NSLLDFNPSE WALPPFEDNA
S*