GBrowse Details

Vigan.01G479100.01

Basic Information:
Name: Vigan.01G479100.01
Multiple alignment
Variant Information
Position: Chr01:60792193..60797797 (+ strand)
Length: 5605
Functional Information:
Description: Similar to Uncharacterized protein. [I1LVR1, Glycine max]
InterPro: Afadin/alpha-actinin-binding (IPR021622)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.93,3.61,12.83,8.68,7.46,5.64,9.04,10.83
Arabidopsis thaliana homolog: AT2G18876.1, AT5G57410.3
Automatic updates:
Name: NM_001255143 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100811569 (LOC100811569), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001415734 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max afadin- and alpha-actinin-binding domain-containing protein (LOC100811569), transcript variant 2, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:60792193..60792672 (+ strand)
Length: 480
Type: five_prime_UTR
Position: Chr01:60792673..60792705 (+ strand)
Length: 33
Type: CDS
Position: Chr01:60792779..60792807 (+ strand)
Length: 29
Type: CDS
Position: Chr01:60792901..60793012 (+ strand)
Length: 112
Type: CDS
Position: Chr01:60793107..60793204 (+ strand)
Length: 98
Type: CDS
Position: Chr01:60793295..60793391 (+ strand)
Length: 97
Type: CDS
Position: Chr01:60793583..60793672 (+ strand)
Length: 90
Type: CDS
Position: Chr01:60793775..60793837 (+ strand)
Length: 63
Type: CDS
Position: Chr01:60793979..60794053 (+ strand)
Length: 75
Type: CDS
Position: Chr01:60794134..60794199 (+ strand)
Length: 66
Type: CDS
Position: Chr01:60794292..60794369 (+ strand)
Length: 78
Type: CDS
Position: Chr01:60795013..60795123 (+ strand)
Length: 111
Type: CDS
Position: Chr01:60795205..60795282 (+ strand)
Length: 78
Type: CDS
Position: Chr01:60795369..60795488 (+ strand)
Length: 120
Type: CDS
Position: Chr01:60796589..60796632 (+ strand)
Length: 44
Type: CDS
Position: Chr01:60796714..60796819 (+ strand)
Length: 106
Type: CDS
Position: Chr01:60796820..60797797 (+ strand)
Length: 978
Type: three_prime_UTR


>Vigan.01G479100.01
GAAAGTCGCA TCTCAACCAA CGAAAATAGA AAACAAAAAC CTGCACGTCT AATTCAAGAG ATGTTTGCTT TCACTTCATT
TCTTCCCAAA CCCAAAATCC AGAGTCAAAA CGATTCTCTA GTTAGGCGCC ATAATTCACA ACCAAAAATA AAGTTCGCGA
TTGCCACCTT GCATCTTTCT ACCCAATCAA GAACCGCCAC GTCACTAATC TTTCAAAGAA AAAGTGCAGG TGAAGCCAGC
TGTGAGGGTT TAATTGGAGG GTATAGAAAC AAATATCCAG ATCCGAGTAC AGAGTATAAT TCGGAGACAT AGTCATAATT
CAGAATTCAG CATCCCCAAC CATAGCAACC GCTTTATTGA TTGATTCCAC TTCAAATTTG GGCACCGCTT AAAATCTCAG
AATTTAGATC TAAAACTGAT ACTACTCTCA CTCGAGTCAC ACGCAGAGCC CAGAAACACT TCTTTCTCAC TCTAACAACA
ATGCCTCCCA CTGAAGGAGA CTTCGATCTT AGGCATCCGT CTCAATCTGC CTTCGCTGCC GGAGAGTACA CGTTCGCCGA
TGTCGAGAAT TTGGAGCATT GCGCTAAGTA TCTCAACCAA TCGCTCGTCA CGTTCGGATT CCCTGCTTCG CTCGATCTCT
TCGCAAATGA CCCCGTTTCC ATTGCGAGGA CTTGCAATTG CATTTACTTT CTGCTCCAAC AGAGACAGCG CGATGTCGAA
TTTAGAGAGT CTGCTAATGA TCAAAGACAA CGACTGTTGT CTGACATCTC GAGGTTAGAA GCCAAAGTGG AGAGGCTCGA
AGGTCAACTA CAAGTCAAAG ACAGGGAGAT AGCGACTATT ACTAGAACAG AAGCTAAAAA CACGGCAGCT TTGAAGGCTC
AAATTGAGAA GCTGCAGCAG GAGAGGGATG AGTTTCAGAG AATGGTTATT GGTAATCAGC AAGTAAAGAC TCAACAACTG
CATGAGATGA AGAAGAAGGA AAAGGAATAC ATAAAATTGC AGGAGAGACT AAACCAAGTT TTAATGGAGA AGAAGAAAGA
GTCTAGGTCG GGCATGGAGA TAATGAATTT GCTTCAGAAG GAAGGGAGGC AACGAGGAAC ATGGAATGGG AAGAAAGCTG
ACAATGATTT TTACAAGAAG ATTGTGGATG CTTATGAGGC AAAAAATCAA GAACTGATGG CAGAGAATAC TGATTTAAGA
GCATTGTTGA GATCAATGCA GGTGGATATG CGTGATTTCT TAAATGCGCC TAACGGACTA CCTAAGCAGT CTCTCACAGG
CAATGAAAGA GTTGAAAGTG ATCCTTCACA ATCTCCATTG GTTGGGAAAA TGGACGTATT TGACCTACCT TTTCATATGG
CCAGAGATCA AATAGAAGAA AGCCTTCGTA ACAAAATGGC TTCTATAAAG GAGCGCATGG TTCAATTGCA AGATGCTCAA
AAGGGAGCAG AAGTTACTTC GGAGGCTACT GAGAGGGAAC TTGAACTCGA AGCTCAGCTT GTTGAAGCAA GAAGCATCAT
ACAGGAGCAG GCATCAATTA TGTCTAAACA TCTTTCAAAA TCTGATAGGC CAAGGGATTC TATCATTCCA GCACCGGCTG
AGGTATGTAT TTATTATGTC TATGTTGTTT CGGCCAAGTA TTTGTTACGT CCATTTAGCA GTCAAACTCG TTTCATATAA
TAGTTTTGAG TATTGTCATT GGATTTGTGG TAATTGGTTG GTAAGTAGCT TTGGAAAATT TTTTGTAGTG AGGTATACTT
TATTTTGTAA AGTTATTATG GCCTTAAACT ATCTTCAGGA AATTCTCATT GCTTGAATAT CCAATCTGGG TCTTAGTTTC
TTGAATTTCT GATCGAGATA GTTTATAGTT CTCATGTGTG ATATAACATC TGACATTTGT ATATCCAAAA GTTCTCCCGT
ATGAACTTTA CAATGCTGAA AGTATCTTCA AAATGCATTC TGTCTAAAGC CCACCGGTTT ACCTGTTGTG GGATTAACTC
GTTGACCTTT GAAGACACCT GGTTTTGAAG ACAAGACTGG TCTGTTCCTT AAATTATGAA GCTAAGTTGT TAGTACTGAG
AATTGTAGAA ATATAAAGGA TAGTAGAAAA GGATTTCCAT CATACTTATG CGGCTACTGG CTGCGGAAGG GAATCAAAAT
ATTAGCGTTG GCATGCTCTT GTGTGCCTTT GTGGTGTTAG CAGGTGTTGG TGTGGAAAGA GGGGTTTGGT GGTGATTTAG
AATCAACCAA TTTTGTGGTC TTCGCTTGAA ATGTTGATTA ACATATGAGT TAGGATTCGA TCATAAAGTC GACATCATTA
TCTTGCATAG TTATACTGGT AATTGGCAGG TTCCAATATG AAATGAGGTA ATACAGTTGT GTTCATGGTG TCACTTTTAG
CTCTATAGAT TTATTGTTAC TTATTGGTCA CATTGATGGC GCCAGTGTTG TGAACTTGTT CTTTCTTGAT TTGCAGGCAG
TATGTAATTA ACAAAACCGA GGCTACTCAT ATTTGATGCA TCGCATGATC AACTGAGTTG GTTCTGCACT GCAGTATAAC
AGGCACGGGC ATCGTTCTTT TAGACTATTT AACTAATCTT GCTTGTTCAT CCTGCACTGC CGTAGTTTAT GTTAACAGGC
AGAGTATGGT TGAACGTC

>Vigan.01G479100.01
ATGCCTCCCA CTGAAGGAGA CTTCGATCTT AGGCATCCGT CTCAATCTGC CTTCGCTGCC GGAGAGTACA CGTTCGCCGA
TGTCGAGAAT TTGGAGCATT GCGCTAAGTA TCTCAACCAA TCGCTCGTCA CGTTCGGATT CCCTGCTTCG CTCGATCTCT
TCGCAAATGA CCCCGTTTCC ATTGCGAGGA CTTGCAATTG CATTTACTTT CTGCTCCAAC AGAGACAGCG CGATGTCGAA
TTTAGAGAGT CTGCTAATGA TCAAAGACAA CGACTGTTGT CTGACATCTC GAGGTTAGAA GCCAAAGTGG AGAGGCTCGA
AGGTCAACTA CAAGTCAAAG ACAGGGAGAT AGCGACTATT ACTAGAACAG AAGCTAAAAA CACGGCAGCT TTGAAGGCTC
AAATTGAGAA GCTGCAGCAG GAGAGGGATG AGTTTCAGAG AATGGTTATT GGTAATCAGC AAGTAAAGAC TCAACAACTG
CATGAGATGA AGAAGAAGGA AAAGGAATAC ATAAAATTGC AGGAGAGACT AAACCAAGTT TTAATGGAGA AGAAGAAAGA
GTCTAGGTCG GGCATGGAGA TAATGAATTT GCTTCAGAAG GAAGGGAGGC AACGAGGAAC ATGGAATGGG AAGAAAGCTG
ACAATGATTT TTACAAGAAG ATTGTGGATG CTTATGAGGC AAAAAATCAA GAACTGATGG CAGAGAATAC TGATTTAAGA
GCATTGTTGA GATCAATGCA GGTGGATATG CGTGATTTCT TAAATGCGCC TAACGGACTA CCTAAGCAGT CTCTCACAGG
CAATGAAAGA GTTGAAAGTG ATCCTTCACA ATCTCCATTG GTTGGGAAAA TGGACGTATT TGACCTACCT TTTCATATGG
CCAGAGATCA AATAGAAGAA AGCCTTCGTA ACAAAATGGC TTCTATAAAG GAGCGCATGG TTCAATTGCA AGATGCTCAA
AAGGGAGCAG AAGTTACTTC GGAGGCTACT GAGAGGGAAC TTGAACTCGA AGCTCAGCTT GTTGAAGCAA GAAGCATCAT
ACAGGAGCAG GCATCAATTA TGTCTAAACA TCTTTCAAAA TCTGATAGGC CAAGGGATTC TATCATTCCA GCACCGGCTG
AGGTATGTAT TTATTATGTC TATGTTGTTT CGGCCAAGTA TTTGTTACGT CCATTTAGCA GTCAAACTCG TTTCATATAA


>Vigan.01G479100.01
MPPTEGDFDL RHPSQSAFAA GEYTFADVEN LEHCAKYLNQ SLVTFGFPAS LDLFANDPVS IARTCNCIYF LLQQRQRDVE
FRESANDQRQ RLLSDISRLE AKVERLEGQL QVKDREIATI TRTEAKNTAA LKAQIEKLQQ ERDEFQRMVI GNQQVKTQQL
HEMKKKEKEY IKLQERLNQV LMEKKKESRS GMEIMNLLQK EGRQRGTWNG KKADNDFYKK IVDAYEAKNQ ELMAENTDLR
ALLRSMQVDM RDFLNAPNGL PKQSLTGNER VESDPSQSPL VGKMDVFDLP FHMARDQIEE SLRNKMASIK ERMVQLQDAQ
KGAEVTSEAT ERELELEAQL VEARSIIQEQ ASIMSKHLSK SDRPRDSIIP APAEVCIYYV YVVSAKYLLR PFSSQTRFI*