GBrowse Details

Vigan.01G479300.01

Basic Information:
Name: Vigan.01G479300.01
Multiple alignment
Variant Information
Position: Chr01:60808099..60812933 (+ strand)
Length: 4835
Functional Information:
Description: Similar to Uncharacterized protein. [K7LWV0, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
InterPro: OB-fold nucleic acid binding domain, AA-tRNA synthetase-type (IPR004365)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Nucleic acid-binding, OB-fold (IPR012340)
Replication protein A, subunit RPA32 (IPR014646)
Replication protein A, C-terminal (IPR014892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.51,2.74,4.60,2.81,5.29,4.38,9.85,4.99
Automatic updates:
Name: PQ855783 NCBI(nuccore)
Organism: Vigna radiata var. radiata
Description: Vigna radiata var. radiata replication protein A 32 kDa subunit A (RPA32) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60808099..60808457 (+ strand)
Length: 359
Type: five_prime_UTR
Position: Chr01:60808458..60808565 (+ strand)
Length: 108
Type: CDS
Position: Chr01:60808718..60808828 (+ strand)
Length: 111
Type: CDS
Position: Chr01:60808898..60808995 (+ strand)
Length: 98
Type: CDS
Position: Chr01:60809101..60809142 (+ strand)
Length: 42
Type: CDS
Position: Chr01:60809789..60809866 (+ strand)
Length: 78
Type: CDS
Position: Chr01:60810043..60810121 (+ strand)
Length: 79
Type: CDS
Position: Chr01:60810238..60810330 (+ strand)
Length: 93
Type: CDS
Position: Chr01:60810409..60810485 (+ strand)
Length: 77
Type: CDS
Position: Chr01:60812280..60812348 (+ strand)
Length: 69
Type: CDS
Position: Chr01:60812440..60812521 (+ strand)
Length: 82
Type: CDS
Position: Chr01:60812522..60812933 (+ strand)
Length: 412
Type: three_prime_UTR


>Vigan.01G479300.01
GAAACGTTCA GAAAAACCAT ATTTTACCCA ACAACGGCTG GGTCATACAT GTAAGCATCC AAAATAAAAA AGTGGTGGAA
TTATAAACTC CGGTTTGAGC TGTACCGGCT CCATCTCCTG GTAGACCAAT TTTTCAAGGG TTGTTTGGTA AACCATTTTT
TTGTTTTTAT TTTATAAAGA CAATTTCTAG GAAGAAGTAA ACTGAAATCA TGGGGGGAAA CCAGCTTTTG CATTTCCATA
ATAATATTAA TAGTAAAAAC TAAACAGAAA GGGCTCTTTA TATATGTATT TTTCAGTTAC AGTACGCACA CCAAATTTTG
AAATTTGTGT ATGCATATCG ATTCTACAAG TGAAGAAGCA TGTATTCGAG TTCGAGCCAG TTCGACGGCA ACGCAGCCTT
CTCTGGAGGC GGATTTATGC CTTCTCAGGC CACTCAGGCC ACTGATCCTT CATTGGTTAC CTCCAAGAAT CGCGATGCTC
AGTCCTTGCT TCCTCTAACA GTGAAGCAAA TATACGATGC GCTTCAAACA AACGATGATA AAGCCAATTT GATTGTTGAC
GGTGTGGACG TTAATAATGT TACTCTTATA GGAAGGGTGT GCAACAAAGC CGAACGAGTT ACTGATGTTA CTTTTGTGCT
TGATGATGGT ACTGGGAAGA TTGAGTGTAA TAAATGGTTT CATGAAGCTG CTGATACAAA TGAAGCAGAG GCTATCTTGG
AAGGAATGTA TGCGAGGCTC CATGGACACT TGAAAAACTT CCAGGGTAAA AGGACCTTAA ATATTTTCCA TTTCAGGCCT
GTGACTGACT TTAACGAGGT TGCGAGTCAT TTCATAGATT GCATACATGT GCATCTCCAC AATTCCAGGA TTCGGAGTAG
TGTCCTTAAT CAGCAACATG GAATGAATTC TACGCCAATT ACTCCCACAA TGGGCTATCA AGCTCAAGTT TTTCCATCAA
CAAATCACTT CTCCGATCAA CATGTCAATG GCCAGAAGAG TGCTGAAAAT ATGATCTTAG ATTTTCTGCA TCTTCCCGCC
AACAGGTCAA GGAATGAGGG AGTCCATCGC GATCATATTG CACAGCATCT TCAAATTTCT TTAGAGAAGC TCACGCTGGC
TATGAAAAGT CTTATCGATG AAGGTGCCGT TTATGAAACC ATAGGTGATC ACTATAAATC AATCATCAAT GGTTGATATA
TTGTTGGACA ATGACATCAA TTTTGTCAGA GTACGCTTAA CTCTGCATAT GCATTATAGA GATGCAACAC ACAGGCAAAC
AGCAGTTCTG CTACATTTTG ATAAAGTCGT CTTTGTTTCT CACGAATATA CCGGTAATAG CTGACAAATT GAACTTGATA
TAGAACGTAT CTATTGTGCG AAGTGTTGTT TTTTATTGAC GAAGATTAAC CAGTTTCAAT TGTTATCGTT ACTGTAGTGG
CCCGTAGTTG TAAGTAGTGT GATGCTCTAG AGAAAGGAGC TAATGGGCTT CATTGCAAGA TGTTACTGTT AGAAAGTTTT
TGTTAAAATC TGAATATGGG TCTACTATTG GGCCCTTCTT GACACGACTA CGAATGGTGT TTTCCTTTTA GCTAAGCTTT
AAAACTCG

>Vigan.01G479300.01
ATGTATTCGA GTTCGAGCCA GTTCGACGGC AACGCAGCCT TCTCTGGAGG CGGATTTATG CCTTCTCAGG CCACTCAGGC
CACTGATCCT TCATTGGTTA CCTCCAAGAA TCGCGATGCT CAGTCCTTGC TTCCTCTAAC AGTGAAGCAA ATATACGATG
CGCTTCAAAC AAACGATGAT AAAGCCAATT TGATTGTTGA CGGTGTGGAC GTTAATAATG TTACTCTTAT AGGAAGGGTG
TGCAACAAAG CCGAACGAGT TACTGATGTT ACTTTTGTGC TTGATGATGG TACTGGGAAG ATTGAGTGTA ATAAATGGTT
TCATGAAGCT GCTGATACAA ATGAAGCAGA GGCTATCTTG GAAGGAATGT ATGCGAGGCT CCATGGACAC TTGAAAAACT
TCCAGGGTAA AAGGACCTTA AATATTTTCC ATTTCAGGCC TGTGACTGAC TTTAACGAGG TTGCGAGTCA TTTCATAGAT
TGCATACATG TGCATCTCCA CAATTCCAGG ATTCGGAGTA GTGTCCTTAA TCAGCAACAT GGAATGAATT CTACGCCAAT
TACTCCCACA ATGGGCTATC AAGCTCAAGT TTTTCCATCA ACAAATCACT TCTCCGATCA ACATGTCAAT GGCCAGAAGA
GTGCTGAAAA TATGATCTTA GATTTTCTGC ATCTTCCCGC CAACAGGTCA AGGAATGAGG GAGTCCATCG CGATCATATT
GCACAGCATC TTCAAATTTC TTTAGAGAAG CTCACGCTGG CTATGAAAAG TCTTATCGAT GAAGGTGCCG TTTATGAAAC
CATAGGTGAT CACTATAAAT CAATCATCAA TGGTTGA

>Vigan.01G479300.01
MYSSSSQFDG NAAFSGGGFM PSQATQATDP SLVTSKNRDA QSLLPLTVKQ IYDALQTNDD KANLIVDGVD VNNVTLIGRV
CNKAERVTDV TFVLDDGTGK IECNKWFHEA ADTNEAEAIL EGMYARLHGH LKNFQGKRTL NIFHFRPVTD FNEVASHFID
CIHVHLHNSR IRSSVLNQQH GMNSTPITPT MGYQAQVFPS TNHFSDQHVN GQKSAENMIL DFLHLPANRS RNEGVHRDHI
AQHLQISLEK LTLAMKSLID EGAVYETIGD HYKSIING*