GBrowse Details

Vigan.01G479300.01

Basic Information:
Name: Vigan.01G479300.01
Multiple alignment
Variant Information
Position: Chr01:60808099..60812933 (+ strand)
Length: 4835
Functional Information:
Description: Similar to Uncharacterized protein. [K7LWV0, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
InterPro: OB-fold nucleic acid binding domain, AA-tRNA synthetase-type (IPR004365)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Nucleic acid-binding, OB-fold (IPR012340)
Replication protein A, subunit RPA32 (IPR014646)
Replication protein A, C-terminal (IPR014892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.51,2.74,4.60,2.81,5.29,4.38,9.85,4.99
Automatic updates:
Name: PQ855783 NCBI(nuccore)
Organism: Vigna radiata var. radiata
Description: Vigna radiata var. radiata replication protein A 32 kDa subunit A (RPA32) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60808099..60808457 (+ strand)
Length: 359
Type: five_prime_UTR
Position: Chr01:60808458..60808565 (+ strand)
Length: 108
Type: CDS
Position: Chr01:60808718..60808828 (+ strand)
Length: 111
Type: CDS
Position: Chr01:60808898..60808995 (+ strand)
Length: 98
Type: CDS
Position: Chr01:60809101..60809142 (+ strand)
Length: 42
Type: CDS
Position: Chr01:60809789..60809866 (+ strand)
Length: 78
Type: CDS
Position: Chr01:60810043..60810121 (+ strand)
Length: 79
Type: CDS
Position: Chr01:60810238..60810330 (+ strand)
Length: 93
Type: CDS
Position: Chr01:60810409..60810485 (+ strand)
Length: 77
Type: CDS
Position: Chr01:60812280..60812348 (+ strand)
Length: 69
Type: CDS
Position: Chr01:60812440..60812521 (+ strand)
Length: 82
Type: CDS
Position: Chr01:60812522..60812933 (+ strand)
Length: 412
Type: three_prime_UTR

>Vigan.01G479300.01 class=Sequence position=Chr01:60808099..60812933 (+ strand)
GAAACGTTCA GAAAAACCAT ATTTTACCCA ACAACGGCTG GGTCATACAT GTAAGCATCC AAAATAAAAA AGTGGTGGAA
TTATAAACTC CGGTTTGAGC TGTACCGGCT CCATCTCCTG GTAGACCAAT TTTTCAAGGG TTGTTTGGTA AACCATTTTT
TTGTTTTTAT TTTATAAAGA CAATTTCTAG GAAGAAGTAA ACTGAAATCA TGGGGGGAAA CCAGCTTTTG CATTTCCATA
ATAATATTAA TAGTAAAAAC TAAACAGAAA GGGCTCTTTA TATATGTATT TTTCAGTTAC AGTACGCACA CCAAATTTTG
AAATTTGTGT ATGCATATCG ATTCTACAAG TGAAGAAGCA TGTATTCGAG TTCGAGCCAG TTCGACGGCA ACGCAGCCTT
CTCTGGAGGC GGATTTATGC CTTCTCAGGC CACTCAGGCC ACTGATCCTT CATTGGTTAC CTCCAAGGTC TCTTCTCCTT
TCTTTTTCCT TTTTATCATA CTCACAACCA CATTCACCAC TAATAAATCC CTAGGGTTTT GCTCTTCTTT TAATTAGAAG
TTTTTTAGAA AATGATGTGG TTTGAAGTCG TATTTTATGA TTTATTATTG TTTTTGTAGA ATCGCGATGC TCAGTCCTTG
CTTCCTCTAA CAGTGAAGCA AATATACGAT GCGCTTCAAA CAAACGATGA TAAAGCCAAT TTGATTGTTG ACGGTGTGGA
CGTTAATAAT GTACGTTCTC CTTGAATCTG TGTTGGTTAA TTTGGTTAAA GTTTGGAGGT TCTGACAATT GGAGTCCAGG
TTACTCTTAT AGGAAGGGTG TGCAACAAAG CCGAACGAGT TACTGATGTT ACTTTTGTGC TTGATGATGG TACTGGGAAG
ATTGAGTGTA ATAAATGGTA ATTGTCGTTA AATTTGTTAT GTCTAGATCA TAATTATTGT TTTAATCTTT TTTTCTTTTG
CGCCATTTCT TTTGGCAATG ACGAGTTTTT GTTCATGTGC AGGTTTCATG AAGCTGCTGA TACAAATGAA GCAGAGGCTA
TCTTGTATGC TACTGCAATA TTGTATTGGC TGTGTAGATT TTCATTTTGT ATTTAGGTTC TGTTCGAATA AAATTCTCAA
AAAATACTTA TAGGAAAATA AAATAAAAAA GATGAAATTA ATTGAATTTC TTTTATGATT TTAAATTAAT TTTTGTGTAC
GCTAATTTAA GAAAGGTTCT TTAATTTTTA ACTTTTTCAA AAACTAATTT TGGTTTATTA AAGAAGTTTA ATTCATTTTA
CTTTCTTATT TTATACTCTT ATCTGTGTTT ACTGATAATT TATTCAAATA AGGTCTTAAT AACCTGTTCG ATTTTTAACT
TTTATATGTA ATTATAATAA TGGTTTTAAT CACTCCGTTT TTCCAATAGA ATCTTCTTCT CGATACTATA AGTGTTTACT
TGTTTAATTC AGAAAGGAAA TGGCATGTTT TGAATTACAT GTTACTGCTG AAATAAAAAA AAAAAAGGTA CAGAAATATG
TCCATCTTAT TTATTCTGCT GCAAGAAAAT TAACAGCAGA TACACTCAAC TGATCATTTT GTTCATGTTT TGTAGTATTG
TTATTTGTTG TCACACGTAT ATGTTTGTCT TTTGTTTTTC AGACAATTCA TTTCATATAG TATGTAGTAA TGTTCTAGTT
TCATTCTTAG GGAAGGAATG TATGCGAGGC TCCATGGACA CTTGAAAAAC TTCCAGGGTA AAAGGACCTT AAATATTTTC
CATTTCAGGT GTGGTACTAA GTTTGCATAT CACTTCTTGT TTTAGCAGTT CAATATTTTT AAATTGTATC GGATATCTAT
CATTATCTTT GTTAAGGATG GGTATCTTCT TTATCAGTGA TTTGAGACGG ACCTATTACT GCTTACAGTT CAATATTTAA
CCCACTCCAC TGCATCATTT TCAGGCCTGT GACTGACTTT AACGAGGTTG CGAGTCATTT CATAGATTGC ATACATGTGC
ATCTCCACAA TTCCAGGATT CGGGTATTTG ATACGCTATT GTAATATTTT TTTTTTTGGA GTTTGACATA AGTGGATATA
TCGCTACGAA TACCATACGT ACATGTGTAT TCTAAAGTTG CACGTGGTAA CATCTTCAGA GTAGTGTCCT TAATCAGCAA
CATGGAATGA ATTCTACGCC AATTACTCCC ACAATGGGCT ATCAAGCTCA AGTTTTTCCA TCAACAAATC ACGTAAGAGA
GTGAACCATA CTTTTCTGCT TTTGTTACAT TTTTATTCTA TATCAGTCTT TTGCTACTTT TCATATGTAG TTCTCCGATC
AACATGTCAA TGGCCAGAAG AGTGCTGAAA ATATGATCTT AGATTTTCTG CATCTTCCCG CCAACAGGTA CGTTATAAGT
GATTTATTTA TTTTTTACCT ATTTGGTTGT AATTAAACAT GTAATCAACT ATTTCGTTTT TCTGAATGTT GGTTTTATCC
TGATTTATGT GTATGCGTAT CCAAAATACC TTTCTTAAAT AGTGCCAAAC TTCTGCATTG TCTGCTGCAG AAGTAGAACA
CGGAGTTTTG TAATAGTTCA ATTCGGAGCA AGGTTATAAA CAGATTTTTT AGGCTAAATT AGTTTTTATT CTTTTGTTCA
GCTTTTTTTT TTCTATTGTG AAAATGCTCA GTGTGGTCCT CTAATTGTCA AAAAATATGC AATGTAACTC TTTTCATCTA
TTATCCCAAT GTCCCAACAT TAGTATGATA GTCACGTGTC TGTTTTTCAT TAGATTATTA GGTTAACATT GTTAGTGAGA
AAATAGGCAG AAAGTACCAC ATTGCAGTTA TTGGCAATTA AAAGCAGTAT GTAAAAATGA AGACTGAAAG ACTTATTGAC
TTTAAGGTTA TTATGAATTG ATTATAGTGT CTTGATTTCT TATATGGTTT GTTTACGGTG GTACTAAATC TTCCCAGCTT
TTCCTCTCTC AAAAACCTAA CATGAACATA ATCATATGTT TCCCTTCGTA TCTTGTGCTT ATAAAGCAAG ATTCATGTCA
TGATTCACTG GTGTTGCGCA ATGTATCCTC GTATACTATT ATGATCAAAA TAAAAATCCA AGAATGTCGG ATGTTCTTTG
TTAGTTTTCT GTTTTGAAAA GTATTGGGAG ACTTATTTGA GATCACAATG TACCTAACAC AAAAAGGGGA GTGTTATTAT
GCTACTGTAA TCTAGTTATA CTCTGGGAAA GTAAATGTCA TTGCTTAAAA GGAACAACGA GATAAAAGGT GTGTGGAAGT
AGCGAAATGA AAATATTCAA ATAGATGTCT TAACTCATAA GAAAAGTTCA ATTACAAAAT AGTTGTATAC GATGAGATAT
TGACGTGGCC TCAATTAGGA ATGTGATATC AAATCAATGA AGTTGGTTTT GCACACATAC ATAGAAGGTT GTAGAAAAAT
CTGACAAGAG AATTCCCTAG AGATGAAGAA TTGGTAAAAG TTAGGGTTAA AAGTAAGACC TCCTCTTTAA TATTTGTAGA
ACAATGTTTC TTGAATCACT GTATATCCAA TTCGTTTATG CTGGGTCAAT TTTTTTCTAA TCTATCGTTA GTTCAATTAA
TCATATTTGA GATGGATGAA TCTGCTAATT TAGAAAACAA ATGTTACAAA CACTAATTAA AGCACATAGA ATAAGGAAAC
TTCTCCTAGA ACCTCAATGT GATCTTAATG CGAGATCCAC TTTCTTGCTG GAAAATTTCT AATCTCTTGC TTTGACTCCG
AGAAAAGGAA AATGAACTCT TTGAATTGTA AGTATACGAT CTGAATGATT GTTTAAGATT TGAACCCATT TGTAGAAGAA
GAAATATGAA TGTTTTGTCG TAAGTATCAC AAACATTCAT GCAATAGTAA TAACAAGCAA CCTTATGAAT TATTTGCTAA
GTACAAGTTC ATCTTGAAGA TGCAGAAGAC AAATGTTTTG ACGTGTTCAA CCAAGGTTAC CAAAAGAACT AGTGAGAAAC
GAAAATTGCA TGAATTTTAG TCCTATGAAA ACGGAGAACG GAGAATGAAT TGGAGTTATA AAAAACCATC ACACGACCCT
AGTTATAATA ATAATAATAA AGCCTGCACT TGTTCTTTTA AATTCATGTG TTGAATATTG TTTGGTATTC ATGCCTTAAT
GTTCTGATAT TGATGTTTCA GGTCAAGGAA TGAGGGAGTC CATCGCGATC ATATTGCACA GCATCTTCAA ATTTCTTTAG
AGAAGCTCAC GTCTCTCTCT ATCTATCTAT CCCTTTCTCT TATCTCTGCT CTCTAATATA GTATCCAAAT CTTGTTGATT
CTTATTGAAT TTCCTCTGCA GGCTGGCTAT GAAAAGTCTT ATCGATGAAG GTGCCGTTTA TGAAACCATA GGTGATCACT
ATAAATCAAT CATCAATGGT TGATATATTG TTGGACAATG ACATCAATTT TGTCAGAGTA CGCTTAACTC TGCATATGCA
TTATAGAGAT GCAACACACA GGCAAACAGC AGTTCTGCTA CATTTTGATA AAGTCGTCTT TGTTTCTCAC GAATATACCG
GTAATAGCTG ACAAATTGAA CTTGATATAG AACGTATCTA TTGTGCGAAG TGTTGTTTTT TATTGACGAA GATTAACCAG
TTTCAATTGT TATCGTTACT GTAGTGGCCC GTAGTTGTAA GTAGTGTGAT GCTCTAGAGA AAGGAGCTAA TGGGCTTCAT
TGCAAGATGT TACTGTTAGA AAGTTTTTGT TAAAATCTGA ATATGGGTCT ACTATTGGGC CCTTCTTGAC ACGACTACGA
ATGGTGTTTT CCTTTTAGCT AAGCTTTAAA ACTCG

>Vigan.01G479300.01
GAAACGTTCA GAAAAACCAT ATTTTACCCA ACAACGGCTG GGTCATACAT GTAAGCATCC AAAATAAAAA AGTGGTGGAA
TTATAAACTC CGGTTTGAGC TGTACCGGCT CCATCTCCTG GTAGACCAAT TTTTCAAGGG TTGTTTGGTA AACCATTTTT
TTGTTTTTAT TTTATAAAGA CAATTTCTAG GAAGAAGTAA ACTGAAATCA TGGGGGGAAA CCAGCTTTTG CATTTCCATA
ATAATATTAA TAGTAAAAAC TAAACAGAAA GGGCTCTTTA TATATGTATT TTTCAGTTAC AGTACGCACA CCAAATTTTG
AAATTTGTGT ATGCATATCG ATTCTACAAG TGAAGAAGCA TGTATTCGAG TTCGAGCCAG TTCGACGGCA ACGCAGCCTT
CTCTGGAGGC GGATTTATGC CTTCTCAGGC CACTCAGGCC ACTGATCCTT CATTGGTTAC CTCCAAGAAT CGCGATGCTC
AGTCCTTGCT TCCTCTAACA GTGAAGCAAA TATACGATGC GCTTCAAACA AACGATGATA AAGCCAATTT GATTGTTGAC
GGTGTGGACG TTAATAATGT TACTCTTATA GGAAGGGTGT GCAACAAAGC CGAACGAGTT ACTGATGTTA CTTTTGTGCT
TGATGATGGT ACTGGGAAGA TTGAGTGTAA TAAATGGTTT CATGAAGCTG CTGATACAAA TGAAGCAGAG GCTATCTTGG
AAGGAATGTA TGCGAGGCTC CATGGACACT TGAAAAACTT CCAGGGTAAA AGGACCTTAA ATATTTTCCA TTTCAGGCCT
GTGACTGACT TTAACGAGGT TGCGAGTCAT TTCATAGATT GCATACATGT GCATCTCCAC AATTCCAGGA TTCGGAGTAG
TGTCCTTAAT CAGCAACATG GAATGAATTC TACGCCAATT ACTCCCACAA TGGGCTATCA AGCTCAAGTT TTTCCATCAA
CAAATCACTT CTCCGATCAA CATGTCAATG GCCAGAAGAG TGCTGAAAAT ATGATCTTAG ATTTTCTGCA TCTTCCCGCC
AACAGGTCAA GGAATGAGGG AGTCCATCGC GATCATATTG CACAGCATCT TCAAATTTCT TTAGAGAAGC TCACGCTGGC
TATGAAAAGT CTTATCGATG AAGGTGCCGT TTATGAAACC ATAGGTGATC ACTATAAATC AATCATCAAT GGTTGATATA
TTGTTGGACA ATGACATCAA TTTTGTCAGA GTACGCTTAA CTCTGCATAT GCATTATAGA GATGCAACAC ACAGGCAAAC
AGCAGTTCTG CTACATTTTG ATAAAGTCGT CTTTGTTTCT CACGAATATA CCGGTAATAG CTGACAAATT GAACTTGATA
TAGAACGTAT CTATTGTGCG AAGTGTTGTT TTTTATTGAC GAAGATTAAC CAGTTTCAAT TGTTATCGTT ACTGTAGTGG
CCCGTAGTTG TAAGTAGTGT GATGCTCTAG AGAAAGGAGC TAATGGGCTT CATTGCAAGA TGTTACTGTT AGAAAGTTTT
TGTTAAAATC TGAATATGGG TCTACTATTG GGCCCTTCTT GACACGACTA CGAATGGTGT TTTCCTTTTA GCTAAGCTTT
AAAACTCG

>Vigan.01G479300.01
ATGTATTCGA GTTCGAGCCA GTTCGACGGC AACGCAGCCT TCTCTGGAGG CGGATTTATG CCTTCTCAGG CCACTCAGGC
CACTGATCCT TCATTGGTTA CCTCCAAGAA TCGCGATGCT CAGTCCTTGC TTCCTCTAAC AGTGAAGCAA ATATACGATG
CGCTTCAAAC AAACGATGAT AAAGCCAATT TGATTGTTGA CGGTGTGGAC GTTAATAATG TTACTCTTAT AGGAAGGGTG
TGCAACAAAG CCGAACGAGT TACTGATGTT ACTTTTGTGC TTGATGATGG TACTGGGAAG ATTGAGTGTA ATAAATGGTT
TCATGAAGCT GCTGATACAA ATGAAGCAGA GGCTATCTTG GAAGGAATGT ATGCGAGGCT CCATGGACAC TTGAAAAACT
TCCAGGGTAA AAGGACCTTA AATATTTTCC ATTTCAGGCC TGTGACTGAC TTTAACGAGG TTGCGAGTCA TTTCATAGAT
TGCATACATG TGCATCTCCA CAATTCCAGG ATTCGGAGTA GTGTCCTTAA TCAGCAACAT GGAATGAATT CTACGCCAAT
TACTCCCACA ATGGGCTATC AAGCTCAAGT TTTTCCATCA ACAAATCACT TCTCCGATCA ACATGTCAAT GGCCAGAAGA
GTGCTGAAAA TATGATCTTA GATTTTCTGC ATCTTCCCGC CAACAGGTCA AGGAATGAGG GAGTCCATCG CGATCATATT
GCACAGCATC TTCAAATTTC TTTAGAGAAG CTCACGCTGG CTATGAAAAG TCTTATCGAT GAAGGTGCCG TTTATGAAAC
CATAGGTGAT CACTATAAAT CAATCATCAA TGGTTGA

>Vigan.01G479300.01
MYSSSSQFDG NAAFSGGGFM PSQATQATDP SLVTSKNRDA QSLLPLTVKQ IYDALQTNDD KANLIVDGVD VNNVTLIGRV
CNKAERVTDV TFVLDDGTGK IECNKWFHEA ADTNEAEAIL EGMYARLHGH LKNFQGKRTL NIFHFRPVTD FNEVASHFID
CIHVHLHNSR IRSSVLNQQH GMNSTPITPT MGYQAQVFPS TNHFSDQHVN GQKSAENMIL DFLHLPANRS RNEGVHRDHI
AQHLQISLEK LTLAMKSLID EGAVYETIGD HYKSIING*