VIGGS:GBrowse

Vigan.01G480000.01

Basic Information:

Name:	Vigan.01G480000.01 Multiple alignment Variant Information
Position:	Chr01:60898487..60902888 (- strand)
Length:	4402

Functional Information:

Description:	Similar to Uncharacterized protein. [V4U164, Citrus clementina.]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:4.98,13.09,17.78,29.90,41.12,16.95,25.12,21.31
Arabidopsis thaliana homolog:	AT2G18910.1

Automatic updates:

Name:	NM_001249695 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306552 (LOC100306552), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:60898487..60898611 (- strand)
Length:	125
Type:	three_prime_UTR

Position:	Chr01:60898612..60898665 (- strand)
Length:	54
Type:	CDS

Position:	Chr01:60901498..60901595 (- strand)
Length:	98
Type:	CDS

Position:	Chr01:60902527..60902761 (- strand)
Length:	235
Type:	CDS

Position:	Chr01:60902762..60902888 (- strand)
Length:	127
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G480000.01
AAAAGAATGA AAAAAAAAAA AGAACTTGTG AAGTACAACT AAGATAGGAA GACAAGAGAT CCAACATATC ACACACAACA
CTCCCTCTTT CAACTAACAT TACTTCCACA CTCTCTCTCC GACCAAAATG CCGATTAACG CGGAATCTAC GCCGCCGCCG
GTCATCGGAA AAATCGGTCC TTACACTGTT TTCATGACGC CGCCGTCGAC ACCAAAACCC TCCGAAGACC CCTCTACCGC
CACCAAGATC GCCCCTCCGC CGCCTCAGAT TCCTAAAACC GTTCCTTCCC CCAAACCCGT GTCCGGTTCC GACGATTCCC
TTTTTGGCAT CTTCAGAAAT GCCGTTACCA AGGTTCAAAC CGCTCACTCA AGTTTGGATG ACCATGTGGC ACGTTGGTTT
GGATTAAATC AGTCAAAATA TCAGTGGGCT CTTGATGATT ATTATGAGAG CAAGGGAATG GAAAAAGGAG ACATCAAAAT
GAAAGAGGTA TCGAGCAAAC TACAGAATGT CTGACATGCC TAGAGTCGGT GGTAAGAAGG ACTATCTTAA TTTGGCAATT
TATTTATCCT TGAATTGTAT GCATAATTCC TTTTAACTTG ATGATTCGTA TCATTATGCA GGATTATTTC AAAGTGAGG

[show][hide][copy]CDS

>Vigan.01G480000.01
ATGCCGATTA ACGCGGAATC TACGCCGCCG CCGGTCATCG GAAAAATCGG TCCTTACACT GTTTTCATGA CGCCGCCGTC
GACACCAAAA CCCTCCGAAG ACCCCTCTAC CGCCACCAAG ATCGCCCCTC CGCCGCCTCA GATTCCTAAA ACCGTTCCTT
CCCCCAAACC CGTGTCCGGT TCCGACGATT CCCTTTTTGG CATCTTCAGA AATGCCGTTA CCAAGGTTCA AACCGCTCAC
TCAAGTTTGG ATGACCATGT GGCACGTTGG TTTGGATTAA ATCAGTCAAA ATATCAGTGG GCTCTTGATG ATTATTATGA
GAGCAAGGGA ATGGAAAAAG GAGACATCAA AATGAAAGAG GTATCGAGCA AACTACAGAA TGTCTGA

[show][hide][copy]PROTEIN

>Vigan.01G480000.01
MPINAESTPP PVIGKIGPYT VFMTPPSTPK PSEDPSTATK IAPPPPQIPK TVPSPKPVSG SDDSLFGIFR NAVTKVQTAH
SSLDDHVARW FGLNQSKYQW ALDDYYESKG MEKGDIKMKE VSSKLQNV*