GBrowse Details

Vigan.01G485500.01

Basic Information:
Name: Vigan.01G485500.01
Multiple alignment
Variant Information
Position: Chr01:61537704..61542365 (- strand)
Length: 4662
Functional Information:
Description: Similar to vesicle transport protein USE1-like. [XP_008232695.1, Prunus mume]
InterPro: Vesicle transport protein, Use1 (IPR019150)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.75,14.29,5.24,4.84,8.65,4.60,6.05,6.29
Arabidopsis thaliana homolog: AT3G55600.1
Automatic updates:
Name: NM_001255817 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100793814 (LOC100793814), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361520 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative membrane fusion protein Use1 (LOC100793814), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:61537704..61537860 (- strand)
Length: 157
Type: three_prime_UTR
Position: Chr01:61537861..61538037 (- strand)
Length: 177
Type: CDS
Position: Chr01:61538596..61538695 (- strand)
Length: 100
Type: CDS
Position: Chr01:61539160..61539264 (- strand)
Length: 105
Type: CDS
Position: Chr01:61539342..61539457 (- strand)
Length: 116
Type: CDS
Position: Chr01:61539667..61539739 (- strand)
Length: 73
Type: CDS
Position: Chr01:61541033..61541100 (- strand)
Length: 68
Type: CDS
Position: Chr01:61541255..61541338 (- strand)
Length: 84
Type: CDS
Position: Chr01:61541339..61542365 (- strand)
Length: 1027
Type: five_prime_UTR


>Vigan.01G485500.01
ATCTGGGTTC GGGTGTTAGG TAATATCATT CTGAATCATG GTGAAAAGAA AAATTCACGG ACCCTTAACG TTCTTAACTT
CCTTTACTTA ATCAAACTCT GAAACTCCTT ATTCAAACTC CGAATATATT TCCAGAATTC TCCAATTTTT CCAAAGCCCT
AACAACTGAA AACCACCACA TTGCCCAAAT TCCAAATCGC GACTGAAGTT TGTTCTTTCT CGCTTCGAAC AGACATTTGG
AGAAGCTTAT GGGAGTCGAA CGTTGGCACT AGAGTCACGC GCGGGGGAGT TGAACGGTGA CCAAAATAGA TTCTAGGGTA
CGCGTGTAAA GTGATCAAAA ATCAAGAGTA GGATATGCGA TAGAACTTCA TCGTCCATAG GGTAAGTTGT CTACCTTTTG
CTCTTTCAAC TTCAATGTGA TCTACTGCGA AAGCATGTTG GTTGTCATGA GATATAAACT AGGTTTTATT TTCCCTTTTA
ATTCAGTCAA ATCATTGGTT GCTGTAGTTC TCTTTAGGGA TATGCAGATA AGTCTTAGAT CATGTTATAT AACCACCCAC
GATGCTGAGC TTGTAAATCG TGGGTTTGAT TATTTTACCG ATGGACAATT ATATTTCTTC CTTCTTTGTA CTTTTCCTTT
TTGTTTCACT CTTAATCTAA TAGAAGCTTT GGTCTTTGTT CAATGGAACG TTCTAGTTTT AATTTTAATT ACAGTGTATA
TATCACTAGA AATTGGCATT AATTGATTTA TTTAATCTGT ATTATGTAAA AGTATAGTTT ACTGCTGCAA AAAGATGCAC
CGGTATGCCC ATGTTTGGAA GCAAAGTTTA TTTCTCAACT TTAAACTTGT TGAAATGGTT TCGTTGATAT TTAGGACTTC
TGGTTGAGTT TAATTTGGGT AACTTGACCG GATAGGCTTT ACCGATAAGC GATAATTGTT TTCAGAGTGA TACATAATCG
CCTTTGTTTG TTTGCTTAAT GATGTTTAAT TTATAGATCA TTTATATAAC TTCTGAACAC TATAGATATG GGAATCAGTA
AAACAGAAGT AAACTTAAGG AGGTTGCTTG CAGCTGCTCC TCAACAGCAA AACCAGGCAA AACTGGTGCA TTATGTTGCT
ACTTTACGTG AACAATTGGA GCAATTGGGT GAAGAAAAGA CACCAGAGGG CTTACCAAGG ATTTCAAAGG CTACGTTGAT
TGAGTACTCA GAGAAGGTTG AAGCCATTGC TTCCAAATTA GTTAACCACG TGACTGACCA ACAAGTATCC GAGAAGGCTT
TTGAGAGGAG TTTTGTTGAA GAAAACTCTT CTGAAATTGA GGAAAAAAAG CAGATACCCC TTTCGTCTGG GTTGAGAAGA
AGACCTGTAC CCACATCATA CACAGAAGAT AAAGTACACG ACCTTGCTGA GACTGACAAT ACATCACCTG TCAAACTGGA
TGCTAGTGCA CACGCACACA TTGAAAAGCA CAGAATGCTT CAAGAAGATT TGACTGATGA GATGGTGGTG TTGGCAAAAC
AACTCAAAGA GAGTAGTCTC ATGATGAGCC AGAGCCTGCA AAATACTGAA AAGATACTTG ATTCTACTGA GAAGGCCATT
GAGCATAGTT TGGCAAGCAC CGGTCGGGCC AATGTGCGAG CAACGGCAAT CTATTCAGAG AGTTCCAAGA CTTCTTGTCT
AACATGGCTT GTGATGTTTG TGATGACATG CGTATTTGTC ATGGTTATTC TTCTAATACG TGTAACATAG TGCACTTCTG
TTTCACTGAG TGAAACAAAT AACTTCCAAT ATAACTTTTC CTATAATGTA AATTGTTATA TTTCATTCAC TGATAATGAA
TTTTGAAAAT GTTGACATAA CCAAACAATT TTTTCTAAGG AAGTGTTTTA AATGAGCTTT TACCCTA

>Vigan.01G485500.01
ATGGGAATCA GTAAAACAGA AGTAAACTTA AGGAGGTTGC TTGCAGCTGC TCCTCAACAG CAAAACCAGG CAAAACTGGT
GCATTATGTT GCTACTTTAC GTGAACAATT GGAGCAATTG GGTGAAGAAA AGACACCAGA GGGCTTACCA AGGATTTCAA
AGGCTACGTT GATTGAGTAC TCAGAGAAGG TTGAAGCCAT TGCTTCCAAA TTAGTTAACC ACGTGACTGA CCAACAAGTA
TCCGAGAAGG CTTTTGAGAG GAGTTTTGTT GAAGAAAACT CTTCTGAAAT TGAGGAAAAA AAGCAGATAC CCCTTTCGTC
TGGGTTGAGA AGAAGACCTG TACCCACATC ATACACAGAA GATAAAGTAC ACGACCTTGC TGAGACTGAC AATACATCAC
CTGTCAAACT GGATGCTAGT GCACACGCAC ACATTGAAAA GCACAGAATG CTTCAAGAAG ATTTGACTGA TGAGATGGTG
GTGTTGGCAA AACAACTCAA AGAGAGTAGT CTCATGATGA GCCAGAGCCT GCAAAATACT GAAAAGATAC TTGATTCTAC
TGAGAAGGCC ATTGAGCATA GTTTGGCAAG CACCGGTCGG GCCAATGTGC GAGCAACGGC AATCTATTCA GAGAGTTCCA
AGACTTCTTG TCTAACATGG CTTGTGATGT TTGTGATGAC ATGCGTATTT GTCATGGTTA TTCTTCTAAT ACGTGTAACA
TAG

>Vigan.01G485500.01
MGISKTEVNL RRLLAAAPQQ QNQAKLVHYV ATLREQLEQL GEEKTPEGLP RISKATLIEY SEKVEAIASK LVNHVTDQQV
SEKAFERSFV EENSSEIEEK KQIPLSSGLR RRPVPTSYTE DKVHDLAETD NTSPVKLDAS AHAHIEKHRM LQEDLTDEMV
VLAKQLKESS LMMSQSLQNT EKILDSTEKA IEHSLASTGR ANVRATAIYS ESSKTSCLTW LVMFVMTCVF VMVILLIRVT
*