VIGGS:GBrowse

Vigan.01G486200.01

Basic Information:

Name:	Vigan.01G486200.01 Multiple alignment Variant Information
Position:	Chr01:61617263..61619099 (+ strand)
Length:	1837

Functional Information:

Description:	Similar to Xyloglucan endotransglucosylase/hydrolase. [V7CCR5, Phaseolus vulgaris]
GO:	Biological Process: carbohydrate metabolic process (GO:0005975)
	Biological Process: cellular glucan metabolic process (GO:0006073)
	Cellular Component: cell wall (GO:0005618)
	Cellular Component: apoplast (GO:0048046)
	Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
	Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro:	Glycoside hydrolase, family 16 (IPR000757)
	Glycoside hydrolase, family 16, active site (IPR008263)
	Beta-glucanase (IPR008264)
	Concanavalin A-like lectin/glucanases superfamily (IPR008985)
	Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:32.99,1.49,50.45,12.84,9.21,49.06,4.06,11.59

Automatic updates:

Name:	BT093114 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-20G22 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255560 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 23-like (LOC100807063), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:61617263..61617583 (+ strand)
Length:	321
Type:	five_prime_UTR

Position:	Chr01:61617584..61617844 (+ strand)
Length:	261
Type:	CDS

Position:	Chr01:61618008..61618201 (+ strand)
Length:	194
Type:	CDS

Position:	Chr01:61618491..61618887 (+ strand)
Length:	397
Type:	CDS

Position:	Chr01:61618888..61619099 (+ strand)
Length:	212
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G486200.01
ATTGGAGAAC ATTTGGATAT ACATATCAGC CCTCATTAGC TGTCATGGTC CCACACGAAG CTAGCCCTCA TCAAAGACAA
GTCAACCCTA TTGCACTCTA CACGTTTGTA ATTTTTTCCC AACCACTTCC ACCACCTCCA AAAACCCAAT GACCATAATT
GCCTCCTCTT AAAAGCACTC CCTATATATA GTTTGATAAC TTTGCATGCA CTACCACCCT CACCAGATAC TTTTTCTCTT
GGCCTTTTCT GCCCCTCTTT CTCTTGCTCA ACATTTTCCA ACCAAATTAA TTAAAACCAA ACTTAGGCAC CACTTCTTGG
AATGACAAAT AAGATATTTC TTGCCCTTCT TTTCCTAGGC TATGTGGTTG CGGTCTCTGC TGGTAACTTC AACCAAGACT
TTGAGATAAC TTGGGGTGAT GGTCGTGCCA AAATCCTCAA CAATGGAGAA CTTCTCACTC TGTCCCTAGA CAAGGCCTCT
GGCTCTGGAT TTCGTTCCAG GAATGAATAC TTGTTTGGAA AAATTGACAT GCAGCTAAAG CTCGTTCCTG GTAACTCTGC
AGGCACAGTC ACAGCTTATT ATCTATCTTC TCTTGGAAAT GTTCATGATG AAATAGATTT TGAATTTCTG GGCAACTTGA
GTGGTGATCC TTATATTCTT CATACAAATG TATTCACACA AGGGAAAGGT AACAGGGAAC AACAGTTCTA TCTGTGGTTC
GACCCCACCA AAGACTTCCA CACATATTCC ATTCTTTGGA ATCCTCAGAG CATCATATTC TCTGTGGATG GGACACCCAT
AAGGGAATTC AAGAATCTTG AATCAAAAGG GGTTTCTTTT CCCAAAAACC AAGCCATGAG GATATATTCA AGCCTTTGGA
ATGCTGATGA CTGGGCCACA AGAGGAGGTT TAGTGAAAAC TGATTGGAGT CAAGCCCCAT TCACAGCCTC TTACAGGAAC
TTCAATGCTC AAGCATGTGT TTGGACTTCT TCTTCAGGCT CATCTTGTTC ATCTAACAAT CCATCATCAA ACCAATCATG
GATGAAGCAA TCAATGGATG CAACAGGGCA AGCCAGAATT CAGTGGGTGC AAAAGAACTA CATGATATAC AACTACTGCA
CAGATACCAA GCGATTCCCA CAAGGTCTTC CTCCTGAATG CACAATCGCA TGAGAACGAA GCTAACCCTC TCACACCTCG
CGAGTTCAAT TTTTTTTTCA TGTTTGTGTA AATTAGTAAA AACACTGTTG GGTCCTCTGG TTTATACTTC AATCTGCATC
CTATTGTCTG TGAAATAGTG TGCAAATGAG ATTCGTTGTA ATTTTGGTTA TAATAAATTT GTTGGAGAGT TATAGATTAA
AAGAATAAAT TAAGGTTGAT TTTCA

[show][hide][copy]CDS

>Vigan.01G486200.01
ATGACAAATA AGATATTTCT TGCCCTTCTT TTCCTAGGCT ATGTGGTTGC GGTCTCTGCT GGTAACTTCA ACCAAGACTT
TGAGATAACT TGGGGTGATG GTCGTGCCAA AATCCTCAAC AATGGAGAAC TTCTCACTCT GTCCCTAGAC AAGGCCTCTG
GCTCTGGATT TCGTTCCAGG AATGAATACT TGTTTGGAAA AATTGACATG CAGCTAAAGC TCGTTCCTGG TAACTCTGCA
GGCACAGTCA CAGCTTATTA TCTATCTTCT CTTGGAAATG TTCATGATGA AATAGATTTT GAATTTCTGG GCAACTTGAG
TGGTGATCCT TATATTCTTC ATACAAATGT ATTCACACAA GGGAAAGGTA ACAGGGAACA ACAGTTCTAT CTGTGGTTCG
ACCCCACCAA AGACTTCCAC ACATATTCCA TTCTTTGGAA TCCTCAGAGC ATCATATTCT CTGTGGATGG GACACCCATA
AGGGAATTCA AGAATCTTGA ATCAAAAGGG GTTTCTTTTC CCAAAAACCA AGCCATGAGG ATATATTCAA GCCTTTGGAA
TGCTGATGAC TGGGCCACAA GAGGAGGTTT AGTGAAAACT GATTGGAGTC AAGCCCCATT CACAGCCTCT TACAGGAACT
TCAATGCTCA AGCATGTGTT TGGACTTCTT CTTCAGGCTC ATCTTGTTCA TCTAACAATC CATCATCAAA CCAATCATGG
ATGAAGCAAT CAATGGATGC AACAGGGCAA GCCAGAATTC AGTGGGTGCA AAAGAACTAC ATGATATACA ACTACTGCAC
AGATACCAAG CGATTCCCAC AAGGTCTTCC TCCTGAATGC ACAATCGCAT GA

[show][hide][copy]PROTEIN

>Vigan.01G486200.01
MTNKIFLALL FLGYVVAVSA GNFNQDFEIT WGDGRAKILN NGELLTLSLD KASGSGFRSR NEYLFGKIDM QLKLVPGNSA
GTVTAYYLSS LGNVHDEIDF EFLGNLSGDP YILHTNVFTQ GKGNREQQFY LWFDPTKDFH TYSILWNPQS IIFSVDGTPI
REFKNLESKG VSFPKNQAMR IYSSLWNADD WATRGGLVKT DWSQAPFTAS YRNFNAQACV WTSSSGSSCS SNNPSSNQSW
MKQSMDATGQ ARIQWVQKNY MIYNYCTDTK RFPQGLPPEC TIA*