GBrowse Details

Vigan.01G493200.01

Basic Information:
Name: Vigan.01G493200.01
Multiple alignment
Variant Information
Position: Chr01:62284939..62288474 (+ strand)
Length: 3536
Functional Information:
Description: Similar to Uncharacterized protein. [I1LY51, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: FMN binding (GO:0010181)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (IPR001155)
Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.82,1.27,13.23,17.30,11.23,16.91,9.58,27.13
Arabidopsis thaliana homolog: AT2G06050.2
Automatic updates:
Name: KP872956 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula 12-oxophytodienoate reductase (OPR3) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001354842 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative 12-oxophytodienoate reductase (LOC100796226), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62284939..62285279 (+ strand)
Length: 341
Type: five_prime_UTR
Position: Chr01:62285280..62285341 (+ strand)
Length: 62
Type: CDS
Position: Chr01:62285448..62285588 (+ strand)
Length: 141
Type: CDS
Position: Chr01:62285986..62286116 (+ strand)
Length: 131
Type: CDS
Position: Chr01:62286547..62286729 (+ strand)
Length: 183
Type: CDS
Position: Chr01:62287448..62288109 (+ strand)
Length: 662
Type: CDS
Position: Chr01:62288110..62288474 (+ strand)
Length: 365
Type: three_prime_UTR


>Vigan.01G493200.01
AAGAAAGTAA GGCACTAATC TTCAAAAAGT TTTCTCCAGT GGAAACCACA CCCACGCCAA CATCATTTTC ACCATCATTC
TCAAACTCAA CTCAACCCAC TCACTCCATC ACCGTCCAGA ACTCAACCCT AAAATATTAT CTTAAATCAA CGTAGCTAAT
AATCAATCAG AGATTAAGCA TGTGCAAAAC TCACCGCAGA CAGTATTAAT CACGTGCAAC ATTCAGACCA ATTGAGCTTG
CAAAAGCAGA AGCATATACA CAGTTGATCC TTCAATAATT GAACTTCTTT TATATTATAT CAAAGTCAAG TGAAGCAAGA
TCATCGCCAC TGCTTCCAAC TATGGCGGAA AATTCCACCC TCTTTTCTCC CTACAACATG GGCAAATTCA ACCTCTCTCA
CAGGGTAGTA TTGGCTCCCA TGACCAGATG CAGAGCGTTG AAGGGGATTC CAAACGCAGC ACTTGCTGAG TATTACGCTC
AAAGATCAAC ACCGGGTGGA TTTCTCATCA GCGAAGGCAC CTTGATCTCC CCCACTGCTC CTGGGTTTCC CCATGTGCCT
GGTATATATT CGGATGAACA AGTGGAGGCA TGGAGAGATG TAGTGGATGC TGTGCATGCC AAAGGCAGCA TTATCTTCTG
TCAACTTTGG CATGTTGGCC GTGCGTCCCA TCCAGTGTAT CAGCCTGGTG GGGCTCCACC CATTTCGTCC ACCTCCAAGC
CCCTATCGGC GAGGTGGAGG ATTCTCCTTC CCGATGGGTC CTATGGCGTT TACCCAGAGC CTCGTGCACT TAATACTTCT
GAGATACCTG AAATTGTGCA GCATTATCGC CAAGCAGCAA TTAATGCAAT TCGAGCAGGT TTTGATGGAA TTGAGATTCA
TGGTGCACAT GGATATCTCA TTGATCAATT CTTAAAGGAT GGAATCAATG ACCGAACTGA TGAATATGGC GGATCACTAG
CAAACCGGTG CAGGTTCCTA TTGCAGGTGG TTGAAGCTGT TGTTTCTGCC ATTGGGGCAG AAAGAGTTGC TGTCAGAATT
TCACCTGCAA TTGATCACCT TGATGCCATT GACTCTGACC CACTTGGGCT AGGCTTAGCA GTGGTTGAGA GACTGAACAG
TTTCCAGAAA AAGCTGGGCA GAAAACTCAT TTATCTTCAT GTTACTCAGC CTCGATACAC AGCTTATGGC CAAACTGAGT
CAGGTAGACC TGGCAGCGAA GAGGAGGAAG CTCATTTGAT GCAGAACTTG AGAAAGGCTT ATGAGGGAAC ATTCATGTGT
AGTGGTGGTT TTACTAGGAA GTTAGGAATG GAAGCTGTAG CTGAAGGTCA TGCTGACTTA GTATCCTATG GTCGTCTTTT
CATTTCCAAT CCAGACTTGG TTTTAAGGCT CAAACTTAAT GCACCTCTAA CCAGATATAA CAGGAAGACG TTTTACACTC
AGGATCCTGT TATAGGCTAC ACAGATTATC CTTTCATGAC CAAAGAAACT GAGGCAAAGG ACCCAAGGGC ACGCCTTTAA
CTTTAATGTT TTTTGGCTTT TATAATTTAG ATAGTCATAT TTATAATTGG AATGTCTCAG TCTTAAGTGA ATGTCTTTGT
TCTGAAAATT TGTCTGAGAT ATAACTTCTT TGGCCTGTAT GGAAGTTGCA TCTCTGTATT TATTATTGAA TTACTTTGTA
TAATAGTTTT AATTCCGTTC CTTCTTAATA TGGTGAACTA TTGTTTTTCA GCTTGAGATT AGTCATATAA CCAATGAAAC
CTTGGAAGAG TATAATGCTA TTAATTTGAT AGCTTTTCTA TATAAGTGAC AGGATCCTCC CTAGGAAATT AGGACTTAAG
ACATACTTTT ATTTATTTTT AAATATAATT ATTATTTTTA TTTCA

>Vigan.01G493200.01
ATGGCGGAAA ATTCCACCCT CTTTTCTCCC TACAACATGG GCAAATTCAA CCTCTCTCAC AGGGTAGTAT TGGCTCCCAT
GACCAGATGC AGAGCGTTGA AGGGGATTCC AAACGCAGCA CTTGCTGAGT ATTACGCTCA AAGATCAACA CCGGGTGGAT
TTCTCATCAG CGAAGGCACC TTGATCTCCC CCACTGCTCC TGGGTTTCCC CATGTGCCTG GTATATATTC GGATGAACAA
GTGGAGGCAT GGAGAGATGT AGTGGATGCT GTGCATGCCA AAGGCAGCAT TATCTTCTGT CAACTTTGGC ATGTTGGCCG
TGCGTCCCAT CCAGTGTATC AGCCTGGTGG GGCTCCACCC ATTTCGTCCA CCTCCAAGCC CCTATCGGCG AGGTGGAGGA
TTCTCCTTCC CGATGGGTCC TATGGCGTTT ACCCAGAGCC TCGTGCACTT AATACTTCTG AGATACCTGA AATTGTGCAG
CATTATCGCC AAGCAGCAAT TAATGCAATT CGAGCAGGTT TTGATGGAAT TGAGATTCAT GGTGCACATG GATATCTCAT
TGATCAATTC TTAAAGGATG GAATCAATGA CCGAACTGAT GAATATGGCG GATCACTAGC AAACCGGTGC AGGTTCCTAT
TGCAGGTGGT TGAAGCTGTT GTTTCTGCCA TTGGGGCAGA AAGAGTTGCT GTCAGAATTT CACCTGCAAT TGATCACCTT
GATGCCATTG ACTCTGACCC ACTTGGGCTA GGCTTAGCAG TGGTTGAGAG ACTGAACAGT TTCCAGAAAA AGCTGGGCAG
AAAACTCATT TATCTTCATG TTACTCAGCC TCGATACACA GCTTATGGCC AAACTGAGTC AGGTAGACCT GGCAGCGAAG
AGGAGGAAGC TCATTTGATG CAGAACTTGA GAAAGGCTTA TGAGGGAACA TTCATGTGTA GTGGTGGTTT TACTAGGAAG
TTAGGAATGG AAGCTGTAGC TGAAGGTCAT GCTGACTTAG TATCCTATGG TCGTCTTTTC ATTTCCAATC CAGACTTGGT
TTTAAGGCTC AAACTTAATG CACCTCTAAC CAGATATAAC AGGAAGACGT TTTACACTCA GGATCCTGTT ATAGGCTACA
CAGATTATCC TTTCATGACC AAAGAAACTG AGGCAAAGGA CCCAAGGGCA CGCCTTTAA

>Vigan.01G493200.01
MAENSTLFSP YNMGKFNLSH RVVLAPMTRC RALKGIPNAA LAEYYAQRST PGGFLISEGT LISPTAPGFP HVPGIYSDEQ
VEAWRDVVDA VHAKGSIIFC QLWHVGRASH PVYQPGGAPP ISSTSKPLSA RWRILLPDGS YGVYPEPRAL NTSEIPEIVQ
HYRQAAINAI RAGFDGIEIH GAHGYLIDQF LKDGINDRTD EYGGSLANRC RFLLQVVEAV VSAIGAERVA VRISPAIDHL
DAIDSDPLGL GLAVVERLNS FQKKLGRKLI YLHVTQPRYT AYGQTESGRP GSEEEEAHLM QNLRKAYEGT FMCSGGFTRK
LGMEAVAEGH ADLVSYGRLF ISNPDLVLRL KLNAPLTRYN RKTFYTQDPV IGYTDYPFMT KETEAKDPRA RL*