GBrowse Details

Vigan.01G496700.01

Basic Information:
Name: Vigan.01G496700.01
Multiple alignment
Variant Information
Position: Chr01:62514574..62519361 (+ strand)
Length: 4788
Functional Information:
Description: Similar to nucleolysin TIAR isoform X1. [XP_006600438.1, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:260.44,151.05,65.45,81.67,69.98,94.84,47.51,75.16
Arabidopsis thaliana homolog: AT1G17370.1, AT1G54080.2, AT3G14100.1
Automatic updates:
Name: BT096955 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-25N2 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62514574..62514860 (+ strand)
Length: 287
Type: five_prime_UTR
Position: Chr01:62514861..62514941 (+ strand)
Length: 81
Type: CDS
Position: Chr01:62515297..62515358 (+ strand)
Length: 62
Type: CDS
Position: Chr01:62515651..62515753 (+ strand)
Length: 103
Type: CDS
Position: Chr01:62515984..62516060 (+ strand)
Length: 77
Type: CDS
Position: Chr01:62516138..62516199 (+ strand)
Length: 62
Type: CDS
Position: Chr01:62516295..62516382 (+ strand)
Length: 88
Type: CDS
Position: Chr01:62516535..62516610 (+ strand)
Length: 76
Type: CDS
Position: Chr01:62516719..62516749 (+ strand)
Length: 31
Type: CDS
Position: Chr01:62517421..62517540 (+ strand)
Length: 120
Type: CDS
Position: Chr01:62517940..62518025 (+ strand)
Length: 86
Type: CDS
Position: Chr01:62518249..62518422 (+ strand)
Length: 174
Type: CDS
Position: Chr01:62518754..62519029 (+ strand)
Length: 276
Type: CDS
Position: Chr01:62519030..62519361 (+ strand)
Length: 332
Type: three_prime_UTR


>Vigan.01G496700.01
GTTTTTTAAT TAATATTTTA GAAAGAGGCT TTAAACTTAA GTTTTAAAGG GGAAGTGTGT GTGAGACTAG GTCCCTCCAA
ATCCAGTATT CCATCTTTCT TCGTTTTTCG CTGGTCTCTC TTCTTTCCTT TCCCCTCTCT TTCGAGGGTT TTTCTTTTTC
TTTTCTTTTT TCCCTTTAAT TTTTCCTTTT ATTTTCTTTT TTCTCTTTCT CTTCTTTCTC AGTTTTCCTT CCATTTTCTT
TCAATCCCAT TTCTTCTTCC TCTGCAACCC TAACCCTAGA ATTTAAGATG CAGCAACAGA GGTTAAGACA GCATGCCATG
ATGCAACCCT CTCTCTACCA CCACCCCGCT CTCCTTACTC CTCCTCAGAT AGAGCCTATC TTGAGTGGAA ATCTGCCACC
TGGCTTTGAT TCGAGTACAT GCCGCAGTGT TTATGTCGGC AACATTCATC CCCAGGTTAC AGAACCACTT CTTCAAGAGC
TTTTTTCGGC TGCAGGTGCC CTTGAAGGAT GCAAGCTTAT CAGGAAAGAG AAGTCATCCT ATGGTTTTGT GGACTACTTC
GATCGCAGTT CTGCTGCATT TGCTATTGTA ACTCTCAATG GGAGGAATAT TTTTGGGCAG CCTATTAAGG TTAACTGGGC
TTATGCTAGC AGCCAGAGAG AGGATACCTC AGGTCACTTC AATATTTTTG TTGGTGACCT TAGTCCTGAG GTCACAGATG
CGACTTTGTA TGCTTGCTTC TCTGTATATC CTAGTTGTTC TGATGCAAGG GTAATGTGGG ATCAAAAGAC AGGCCGTTCC
AGGGGATTTG GATTTGTTTC TTTTCGGAAT CAGCAGGATG CTCAAAGTGC TATAAATGAT TTGACTGGAA AATGGCTTGG
AAGCAGACAG ATTCGTTGTA ATTGGGCAAC AAAAGGGGCC AGTGCAAGTG ATGAAAAGCA GAGTTCGGAT TCCAAAAGTA
TCGTGGAGTT GACTAATGGA ACATCAGAAG AAGGCCAGGA AATAACCAAT GATGACCCCC CCGAGAAGAA TCCTCAATAT
ACCACGGTTT ATGTTGGCAA TCTTGCTCCG GAGGTCACTT CTGTTGATCT CCATCACCAT TTTCATTCTC TTGGTGCCGG
AACTATTGAA GATGTTAGGG TGCAACGAGA CAAAGGTTTT GGGTTTGTGA GATACAGTAC CCATGCTGAA GCAGCTCTTG
CTATACAGAT GGGTAATGCT CGAATTCTCT TTGGCAAACC TATAAAGTGT TCATGGGGTA GCAAACCTAC TCCTCCAGGA
ACTGCCTCTA CTCCTCTTCC GCCTCCTACT TCTGCAAATG TGCCTGGTTT CTCTCTTGCT AGTCTTGCAG CATATGAACG
CCAAATGGCT TTGAGTAAAA TGGGTGGTGC ACACGCCCTT CTGCATCAGC AAGGACAGCA TGCCCTAAAA CAGGTAGCCA
TGGGAATGGG TGCTCCAGGG GCTGGTTATG ATGCAAGGTT TCAGAATGTT GCTACCACCC AGCACCTAAT GTACTATCAG
TAAAATGTGT TGTGTAATCT TCCTGCGATA AAAAAGGGAG GGTTAAAACC GTAAGAATAT TTCTACAATA CCCGTTTATG
TCTTCCTCTT CCTTGTCTGC TTTTCTATCT TTAGCCTCCA AAATTTTCTT ATGTTCTTAT TTATGGTCCG TACAATTTTA
ATGCTACCGC TGCGTGCATG AATGGTGTGT CTTGTATTTT CTAATGACGA TCATTCGATG GTTGTATTGT TCGTTAACCT
TTGCGGTTTG GGATATTAAA CTTTGCGTAG TTATGTATTT CTGTCTTTTT AGTATCCTTT CCTCTTTCTG AAGTACCAGA
GAATTTAAGA CTTGC

>Vigan.01G496700.01
ATGCAGCAAC AGAGGTTAAG ACAGCATGCC ATGATGCAAC CCTCTCTCTA CCACCACCCC GCTCTCCTTA CTCCTCCTCA
GATAGAGCCT ATCTTGAGTG GAAATCTGCC ACCTGGCTTT GATTCGAGTA CATGCCGCAG TGTTTATGTC GGCAACATTC
ATCCCCAGGT TACAGAACCA CTTCTTCAAG AGCTTTTTTC GGCTGCAGGT GCCCTTGAAG GATGCAAGCT TATCAGGAAA
GAGAAGTCAT CCTATGGTTT TGTGGACTAC TTCGATCGCA GTTCTGCTGC ATTTGCTATT GTAACTCTCA ATGGGAGGAA
TATTTTTGGG CAGCCTATTA AGGTTAACTG GGCTTATGCT AGCAGCCAGA GAGAGGATAC CTCAGGTCAC TTCAATATTT
TTGTTGGTGA CCTTAGTCCT GAGGTCACAG ATGCGACTTT GTATGCTTGC TTCTCTGTAT ATCCTAGTTG TTCTGATGCA
AGGGTAATGT GGGATCAAAA GACAGGCCGT TCCAGGGGAT TTGGATTTGT TTCTTTTCGG AATCAGCAGG ATGCTCAAAG
TGCTATAAAT GATTTGACTG GAAAATGGCT TGGAAGCAGA CAGATTCGTT GTAATTGGGC AACAAAAGGG GCCAGTGCAA
GTGATGAAAA GCAGAGTTCG GATTCCAAAA GTATCGTGGA GTTGACTAAT GGAACATCAG AAGAAGGCCA GGAAATAACC
AATGATGACC CCCCCGAGAA GAATCCTCAA TATACCACGG TTTATGTTGG CAATCTTGCT CCGGAGGTCA CTTCTGTTGA
TCTCCATCAC CATTTTCATT CTCTTGGTGC CGGAACTATT GAAGATGTTA GGGTGCAACG AGACAAAGGT TTTGGGTTTG
TGAGATACAG TACCCATGCT GAAGCAGCTC TTGCTATACA GATGGGTAAT GCTCGAATTC TCTTTGGCAA ACCTATAAAG
TGTTCATGGG GTAGCAAACC TACTCCTCCA GGAACTGCCT CTACTCCTCT TCCGCCTCCT ACTTCTGCAA ATGTGCCTGG
TTTCTCTCTT GCTAGTCTTG CAGCATATGA ACGCCAAATG GCTTTGAGTA AAATGGGTGG TGCACACGCC CTTCTGCATC
AGCAAGGACA GCATGCCCTA AAACAGGTAG CCATGGGAAT GGGTGCTCCA GGGGCTGGTT ATGATGCAAG GTTTCAGAAT
GTTGCTACCA CCCAGCACCT AATGTACTAT CAGTAA

>Vigan.01G496700.01
MQQQRLRQHA MMQPSLYHHP ALLTPPQIEP ILSGNLPPGF DSSTCRSVYV GNIHPQVTEP LLQELFSAAG ALEGCKLIRK
EKSSYGFVDY FDRSSAAFAI VTLNGRNIFG QPIKVNWAYA SSQREDTSGH FNIFVGDLSP EVTDATLYAC FSVYPSCSDA
RVMWDQKTGR SRGFGFVSFR NQQDAQSAIN DLTGKWLGSR QIRCNWATKG ASASDEKQSS DSKSIVELTN GTSEEGQEIT
NDDPPEKNPQ YTTVYVGNLA PEVTSVDLHH HFHSLGAGTI EDVRVQRDKG FGFVRYSTHA EAALAIQMGN ARILFGKPIK
CSWGSKPTPP GTASTPLPPP TSANVPGFSL ASLAAYERQM ALSKMGGAHA LLHQQGQHAL KQVAMGMGAP GAGYDARFQN
VATTQHLMYY Q*