GBrowse Details

Vigan.01G499400.01

Basic Information:
Name: Vigan.01G499400.01
Multiple alignment
Variant Information
Position: Chr01:62832633..62835975 (+ strand)
Length: 3343
Functional Information:
Description: Similar to Eukaryotic translation initiation factor 3 subunit K. [I1MS38, Glycine max]
GO: Biological Process: regulation of translational initiation (GO:0006446)
Cellular Component: cytoplasm (GO:0005737)
Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852)
Molecular Function: translation initiation factor activity (GO:0003743)
Molecular Function: binding (GO:0005488)
Molecular Function: ribosome binding (GO:0043022)
InterPro: SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062)
Eukaryotic translation initiation factor 3 subunit K (IPR009374)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Translation initiation factor 3, subunit 12, N-terminal, eukaryotic (IPR016020)
Armadillo-type fold (IPR016024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:90.91,75.69,64.57,44.03,88.08,146.78,85.33,46.86
Arabidopsis thaliana homolog: AT4G33250.1
Automatic updates:
Name: NM_001248227 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CSN8/PSMD8/EIF3K domain-containing protein (LOC100306445), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62832633..62832710 (+ strand)
Length: 78
Type: five_prime_UTR
Position: Chr01:62832711..62832824 (+ strand)
Length: 114
Type: CDS
Position: Chr01:62832954..62833010 (+ strand)
Length: 57
Type: CDS
Position: Chr01:62833104..62833154 (+ strand)
Length: 51
Type: CDS
Position: Chr01:62833254..62833316 (+ strand)
Length: 63
Type: CDS
Position: Chr01:62833954..62834004 (+ strand)
Length: 51
Type: CDS
Position: Chr01:62834077..62834143 (+ strand)
Length: 67
Type: CDS
Position: Chr01:62834954..62835036 (+ strand)
Length: 83
Type: CDS
Position: Chr01:62835471..62835674 (+ strand)
Length: 204
Type: CDS
Position: Chr01:62835675..62835975 (+ strand)
Length: 301
Type: three_prime_UTR


>Vigan.01G499400.01
GGATTCCTTT GTCTCTAATA AAAAGAGAAG GGTTTGGTAG AAAGAAGTAG GGTTTGAGTT GCAGAGCATA CGAGAGAGAT
GGGAAGAGAA AGAGAGGCAA CGAAGGTAGC ATACACAGTG GAGCAGCTTG TGGCCTTCAA TCGATACAAT CCCGATATTC
TTCCAGATCT CGAAAACTAT GTCAACGATC AGGTTTCGTC TCAAACATAT AGCTTGGACG CCAATCTCTG CCTTCTTCGC
CTTTACCAGT TTGAACCGGA CAAAATGAGT TCCCAGATTG TGGCCCGCAT ATTGGTTAAG GCGCTTATGG CAATGCCGGC
CCCAGATTTC AGCCTATGTC TCTTTTTAAT TCCAGAACGT GTGCAAATGG AGGAGCAGTT CAAGACTTTG ATTGTTCTGT
CTCATTATTT GGAGACAGGA AGATTTCGTC AGTTCTGGGA TGAAGCAGCA AAAAGTCGTC ATATAGTTGA AGCTGTGCCA
GGGTTTGAGC AGGCAATTCA AGGATATGCA GTCCATGTCC TTTCCCTGAC TTACCAAAAG ATTCCTAGAA CTGTTCTTGC
TGAGGCTATC AACATCGAAG GTTTATCCTT GGACAAATTT CTTGAGCACC AAGTAGCCAA CAGTGGTTGG GTTATTGAGA
AAAGCCAAGG CAGGGGTCAA GTCATTGTCC TTCCGAGAAA TGAATTTAAT GACCCAGCTT TGAAGAAAAA TGCTGCAGAC
AGTGTACCAT TGGAGCACAT TACCCGTATC TTCCCCATTC TTAGTTGATT TTTTTTCCGT GTAGAATGCG AATTTTCTTT
CTGAAGGATT TGTACGAATG AGACCAGTTG GAGCAACATC TTACAATTTT CCCCTCGATA CTTAAATTAC AATTAGTGGA
CACCTATTGT AGTTTACTCA TGTTTTATCG TCCTGTCTGA AATTAATCTA TTGTGGGTAC GTTCTAAAAT ACGACTCTAT
TTATTATTCT CTTTAGTTTA CAGGGTGCGA AGGGCGAGTT TTAAAGAAAC TTTTATTGCA TATTGTGCTT TTCTTTAGAC
CGCTAAAGAG AATTAGAATT TTCCTAGTA

>Vigan.01G499400.01
ATGGGAAGAG AAAGAGAGGC AACGAAGGTA GCATACACAG TGGAGCAGCT TGTGGCCTTC AATCGATACA ATCCCGATAT
TCTTCCAGAT CTCGAAAACT ATGTCAACGA TCAGGTTTCG TCTCAAACAT ATAGCTTGGA CGCCAATCTC TGCCTTCTTC
GCCTTTACCA GTTTGAACCG GACAAAATGA GTTCCCAGAT TGTGGCCCGC ATATTGGTTA AGGCGCTTAT GGCAATGCCG
GCCCCAGATT TCAGCCTATG TCTCTTTTTA ATTCCAGAAC GTGTGCAAAT GGAGGAGCAG TTCAAGACTT TGATTGTTCT
GTCTCATTAT TTGGAGACAG GAAGATTTCG TCAGTTCTGG GATGAAGCAG CAAAAAGTCG TCATATAGTT GAAGCTGTGC
CAGGGTTTGA GCAGGCAATT CAAGGATATG CAGTCCATGT CCTTTCCCTG ACTTACCAAA AGATTCCTAG AACTGTTCTT
GCTGAGGCTA TCAACATCGA AGGTTTATCC TTGGACAAAT TTCTTGAGCA CCAAGTAGCC AACAGTGGTT GGGTTATTGA
GAAAAGCCAA GGCAGGGGTC AAGTCATTGT CCTTCCGAGA AATGAATTTA ATGACCCAGC TTTGAAGAAA AATGCTGCAG
ACAGTGTACC ATTGGAGCAC ATTACCCGTA TCTTCCCCAT TCTTAGTTGA 

>Vigan.01G499400.01
MGREREATKV AYTVEQLVAF NRYNPDILPD LENYVNDQVS SQTYSLDANL CLLRLYQFEP DKMSSQIVAR ILVKALMAMP
APDFSLCLFL IPERVQMEEQ FKTLIVLSHY LETGRFRQFW DEAAKSRHIV EAVPGFEQAI QGYAVHVLSL TYQKIPRTVL
AEAINIEGLS LDKFLEHQVA NSGWVIEKSQ GRGQVIVLPR NEFNDPALKK NAADSVPLEH ITRIFPILS*