GBrowse Details

Vigan.01G502800.01

Basic Information:
Name: Vigan.01G502800.01
Multiple alignment
Variant Information
Position: Chr01:63116770..63119689 (+ strand)
Length: 2920
Functional Information:
Description: Similar to Uncharacterized protein. [D7RJ53, Glycine max]
GO: Biological Process: chromatin remodeling (GO:0006338)
Cellular Component: nuclear chromosome (GO:0000228)
InterPro: SNF5/SMARCB1/INI1 (IPR006939)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.81,12.46,8.57,19.39,15.88,18.70,21.45,10.15
Arabidopsis thaliana homolog: AT3G17590.2
Automatic updates:
Name: NM_001254365 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chromatin structure-remodeling complex protein BSH-like (SNF5), mRNA.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:63116770..63116951 (+ strand)
Length: 182
Type: five_prime_UTR
Position: Chr01:63116952..63117001 (+ strand)
Length: 50
Type: CDS
Position: Chr01:63117072..63117160 (+ strand)
Length: 89
Type: CDS
Position: Chr01:63117236..63117330 (+ strand)
Length: 95
Type: CDS
Position: Chr01:63117896..63117967 (+ strand)
Length: 72
Type: CDS
Position: Chr01:63118054..63118101 (+ strand)
Length: 48
Type: CDS
Position: Chr01:63118196..63118279 (+ strand)
Length: 84
Type: CDS
Position: Chr01:63118536..63118574 (+ strand)
Length: 39
Type: CDS
Position: Chr01:63118659..63118741 (+ strand)
Length: 83
Type: CDS
Position: Chr01:63118863..63118925 (+ strand)
Length: 63
Type: CDS
Position: Chr01:63119176..63119275 (+ strand)
Length: 100
Type: CDS
Position: Chr01:63119276..63119689 (+ strand)
Length: 414
Type: three_prime_UTR


>Vigan.01G502800.01
TAAAAACTGA AAAAAGAAAA ATAAAAATTA GACACAGAAA CTGCATAGTG GTAAGTAAGT GTGGGAAGAA GATATTTTTC
TAGTATATTG ATTGATTGAT TTTGTTTTGG GGGCGCAGAA GTTTGTTTGT GAACCTTTTG CATGAAAACG GCGTCGTAAT
CGTCCATTCG TATTGGGAGA GCATGAAAAC CCCGATTCCG GGTTTCTACC GAAACCCTGT AAAGTTCAGA ATGCCAACTG
CAGAGAACTT GGTTCCCATT CGATTGGATA TCGAAATCGA AGGACAAAGA TACAAAGACG CATTCACTTG GAACCCTTCT
GATCCCGACT CCGAGGTTGT GGTCTTTGCA AAAAGGACTG TTAAAGACTT GAAGCTCCCT CCCGCCTTTG TTACACAAAT
TGCTCAATCT ATTCAATCAC AGCTCTTGGA GTTTAGATCC TATGAAGGCC AGGATATGTA TGCTGGGGAG AAGATTGTTC
CGATCAAGCT CGATCTTCGT GTTAATCATA CGCTTGTGAA GGACCAGTTT TTATGGGACT TGAACAACTT TGAGAGTGAC
CCTGAAGAGT TTGCTAGAAT CTTCTGCAAG GACATGGGCA TTGAAGATCC TGAGGTTGGA CCAGCTATTG CCTTTGCTAT
CAGAGAGCAA CTTTACGAAA TTGCAATTCA AAGTGTGGTC TCAGCAAGAG AAAGCAGAAT GAGCAAGAAG GGTCGTCGAG
GGGCTGAATA TACTCCGATC AGTAAAGGAG GTGCCGTAGC AGTGGACTTG GTGAAGTTAT TTGGTCCGAA ATCTAGTGTA
GTACGGAAAA GAAAGGAGTG GGACGTATAT GAACCTATTG TGGACCTGCT TTCCAATGAG GAAGTTGATG CCCTTGAAGC
AAAGGAAGAG AGAAATTTCA GGTGAATTGG CTCCGTGGTC AGCCACACCA TATCAGAAGG TTAGAGTTTG AAGTTTTTGT
ATTATATGCA AGCTGGGTTT TTAGTACCAG GAATCATTGA TTATCATTTG ATTTCGTTGG ATGTAATCTT GTAGTTTCTT
ATTTATATTC TCTGTACCCA AAGCGAAAGA AAAAAAAAGT GTTTACATCT TTGCAGAGTG TTCTGGCCAT TGTAGTATCA
ATAACAATCA AGCCATTTTC CATTTGGTGG GTTTCCGTGA AACCAAGAGG TCCCTAAATT AGTCCACATA AATCTGGTTA
ACATATTTGA AGTTAAAAGT AATTGAGTGT TTCTCCTAGA AGAAATCTTT CTTTGTAATC TAGAAAATCT CTATTAAATA
TACTATATAT TATAAATTAA AAATTCAATT TGAGGGGTC

>Vigan.01G502800.01
ATGAAAACCC CGATTCCGGG TTTCTACCGA AACCCTGTAA AGTTCAGAAT GCCAACTGCA GAGAACTTGG TTCCCATTCG
ATTGGATATC GAAATCGAAG GACAAAGATA CAAAGACGCA TTCACTTGGA ACCCTTCTGA TCCCGACTCC GAGGTTGTGG
TCTTTGCAAA AAGGACTGTT AAAGACTTGA AGCTCCCTCC CGCCTTTGTT ACACAAATTG CTCAATCTAT TCAATCACAG
CTCTTGGAGT TTAGATCCTA TGAAGGCCAG GATATGTATG CTGGGGAGAA GATTGTTCCG ATCAAGCTCG ATCTTCGTGT
TAATCATACG CTTGTGAAGG ACCAGTTTTT ATGGGACTTG AACAACTTTG AGAGTGACCC TGAAGAGTTT GCTAGAATCT
TCTGCAAGGA CATGGGCATT GAAGATCCTG AGGTTGGACC AGCTATTGCC TTTGCTATCA GAGAGCAACT TTACGAAATT
GCAATTCAAA GTGTGGTCTC AGCAAGAGAA AGCAGAATGA GCAAGAAGGG TCGTCGAGGG GCTGAATATA CTCCGATCAG
TAAAGGAGGT GCCGTAGCAG TGGACTTGGT GAAGTTATTT GGTCCGAAAT CTAGTGTAGT ACGGAAAAGA AAGGAGTGGG
ACGTATATGA ACCTATTGTG GACCTGCTTT CCAATGAGGA AGTTGATGCC CTTGAAGCAA AGGAAGAGAG AAATTTCAGG
TGA

>Vigan.01G502800.01
MKTPIPGFYR NPVKFRMPTA ENLVPIRLDI EIEGQRYKDA FTWNPSDPDS EVVVFAKRTV KDLKLPPAFV TQIAQSIQSQ
LLEFRSYEGQ DMYAGEKIVP IKLDLRVNHT LVKDQFLWDL NNFESDPEEF ARIFCKDMGI EDPEVGPAIA FAIREQLYEI
AIQSVVSARE SRMSKKGRRG AEYTPISKGG AVAVDLVKLF GPKSSVVRKR KEWDVYEPIV DLLSNEEVDA LEAKEERNFR
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