GBrowse Details

Vigan.01G506300.01

Basic Information:
Name: Vigan.01G506300.01
Multiple alignment
Variant Information
Position: Chr01:63399069..63403719 (+ strand)
Length: 4651
Functional Information:
Description: Similar to Uncharacterized protein. [I1LYG4, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Sec20 (IPR005606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:51.29,31.93,29.09,30.23,43.86,21.87,35.23,34.99
Arabidopsis thaliana homolog: AT3G17440.1
Structure :
Position: Chr01:63399069..63399430 (+ strand)
Length: 362
Type: five_prime_UTR
Position: Chr01:63399431..63399507 (+ strand)
Length: 77
Type: CDS
Position: Chr01:63400249..63400341 (+ strand)
Length: 93
Type: CDS
Position: Chr01:63400766..63400859 (+ strand)
Length: 94
Type: CDS
Position: Chr01:63401135..63401172 (+ strand)
Length: 38
Type: CDS
Position: Chr01:63401440..63401537 (+ strand)
Length: 98
Type: CDS
Position: Chr01:63402379..63402458 (+ strand)
Length: 80
Type: CDS
Position: Chr01:63402525..63402581 (+ strand)
Length: 57
Type: CDS
Position: Chr01:63402673..63402765 (+ strand)
Length: 93
Type: CDS
Position: Chr01:63402849..63402923 (+ strand)
Length: 75
Type: CDS
Position: Chr01:63403262..63403366 (+ strand)
Length: 105
Type: CDS
Position: Chr01:63403367..63403719 (+ strand)
Length: 353
Type: three_prime_UTR


>Vigan.01G506300.01
AAAACAATAA AATATTATCT GACAACGGTT CCTTTCCTAA TTCCATCGTT TGTTCCATCT CATTGTACAG CACACAGAGG
TCGAACTTCC TCGTTGTGTT GTGGTGTGTT CTGTTTCGTG TGTTGTTCTG CCTCTGCTCT CTCTTTCTCT TCCTCTCCCA
CTCTCTGTTC GTTCACTTTT CAATTTCATC CAATCCAAAC CTTCCACATT CTCCTTCTGC ATTCTCTGCT CCTTTCTCAA
CAATTATTAT GCACCATCGT CCTAATCGTC TTCTCTCACC AACCGACTAG GGTTTGTCTC CCACGTTAGG TTTTTCGTTT
TTTTTGCCGG GATTTTGGGG GCAGACTTAA TCTCCGGCAG CTATGGCCTC CAATTTGCAG ATGAGTCCTG AGGTGGAGCA
GATCCACGGT GAAATTCGCG ACAACTTTCG TGCTCTTGCA AATGGCTTCC AGAAGTTGGA TAAGATTAAA GATGCCAATA
GACAAACTAA TCAGCTTGAA GAACTTACCG AAAAGATGAG GGAGTCCAAA AGGTTGATAA AGGAGTTTGA TCGTAAAATT
AAAGATGAAG AGGGGGGAAA TCCCCCAGAA GTGAATAAGC AACTGAATGA TGAAAAGCAA TCAATGATCA AGGAGCTAAA
CTCATATGTG GCATTGCGAA AAACGTACAT GAACACCATT GGAAATAAAA AACTTGAACT TTTTGACAAT GGAGCTGGAG
CAAGCGAACC TACAGCAGAT GAAAACGTTC GACTGGCATC AGAAATGTCA AATCAAGAGC TAATCAATGC TGGGACAAAG
ACAATGGATG AAACTGACCA GGCTATTGAG AGATCTAAGC AGGTTGTACA TCAAACAATT GAAGTTGGCA CCCAAACTGC
TGTTACCTTG AAAGGCCAAA CTGAACAAAT GGGCCGTATT GTTAATGAAC TTGATTCAAT TCAGTTCTCA ATTAAGAAGG
CCTCCCAACT TGTTAAGGAG ATTGGTAGAC AGGTAGCTAC AGACAAGTGC ATCATGCTTT TTCTGTTCCT TATTGTCTGT
GGTGTGATAG CCATTATTGT CGTGAAGATT ATACATCCCA ACAACAAAGA TATTAGGGAT ATCCCGGGAT TGGCACCTCC
AGTTCCCACA AGGAGGCTTT TGTATGCAAG GACAACAGAT CATTTCGATT AACTCTTATA TTTGAACAAG AGTGAACTGC
GTCCTACTCC TACCAACTTG ATACTTGTTC TCATTGCTGC GGAAGTTATA GGATTGCTGT CTGGAGGCAT TATTTTGGTC
TCTTCAATTA ATTAAATATT GTACACTTGC ATACCCTTGT TTGTGATTTT ATGTAAATCA CACGAGAGCC TTCTGCTTTT
CTTTCTTGAG TGCCATGTTT CGTTATTGTA ACATTCCAAA AGTGTAGGAC CAGAGAAAGT AAATCTGTTA AATTCGTTCT
GTATATGTCT AATTCAAAGT GAGATTTGCC CCTCCCCCTC CCCTATTTCT CTTTAATGTA CACACATTCC GAACTCTGAT
GGATT

>Vigan.01G506300.01
ATGGCCTCCA ATTTGCAGAT GAGTCCTGAG GTGGAGCAGA TCCACGGTGA AATTCGCGAC AACTTTCGTG CTCTTGCAAA
TGGCTTCCAG AAGTTGGATA AGATTAAAGA TGCCAATAGA CAAACTAATC AGCTTGAAGA ACTTACCGAA AAGATGAGGG
AGTCCAAAAG GTTGATAAAG GAGTTTGATC GTAAAATTAA AGATGAAGAG GGGGGAAATC CCCCAGAAGT GAATAAGCAA
CTGAATGATG AAAAGCAATC AATGATCAAG GAGCTAAACT CATATGTGGC ATTGCGAAAA ACGTACATGA ACACCATTGG
AAATAAAAAA CTTGAACTTT TTGACAATGG AGCTGGAGCA AGCGAACCTA CAGCAGATGA AAACGTTCGA CTGGCATCAG
AAATGTCAAA TCAAGAGCTA ATCAATGCTG GGACAAAGAC AATGGATGAA ACTGACCAGG CTATTGAGAG ATCTAAGCAG
GTTGTACATC AAACAATTGA AGTTGGCACC CAAACTGCTG TTACCTTGAA AGGCCAAACT GAACAAATGG GCCGTATTGT
TAATGAACTT GATTCAATTC AGTTCTCAAT TAAGAAGGCC TCCCAACTTG TTAAGGAGAT TGGTAGACAG GTAGCTACAG
ACAAGTGCAT CATGCTTTTT CTGTTCCTTA TTGTCTGTGG TGTGATAGCC ATTATTGTCG TGAAGATTAT ACATCCCAAC
AACAAAGATA TTAGGGATAT CCCGGGATTG GCACCTCCAG TTCCCACAAG GAGGCTTTTG TATGCAAGGA CAACAGATCA
TTTCGATTAA 

>Vigan.01G506300.01
MASNLQMSPE VEQIHGEIRD NFRALANGFQ KLDKIKDANR QTNQLEELTE KMRESKRLIK EFDRKIKDEE GGNPPEVNKQ
LNDEKQSMIK ELNSYVALRK TYMNTIGNKK LELFDNGAGA SEPTADENVR LASEMSNQEL INAGTKTMDE TDQAIERSKQ
VVHQTIEVGT QTAVTLKGQT EQMGRIVNEL DSIQFSIKKA SQLVKEIGRQ VATDKCIMLF LFLIVCGVIA IIVVKIIHPN
NKDIRDIPGL APPVPTRRLL YARTTDHFD*