VIGGS:GBrowse

Vigan.01G509400.01

Basic Information:

Name:	Vigan.01G509400.01 Multiple alignment Variant Information
Position:	Chr01:63702233..63705711 (+ strand)
Length:	3479

Functional Information:

Description:	Similar to 30S ribosomal protein S1, chloroplastic. [XP_008223432.1, Prunus mume]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S1 (IPR000110)
	Ribosomal protein S1, RNA-binding domain (IPR003029)
	Nucleic acid-binding, OB-fold (IPR012340)
	RNA-binding domain, S1 (IPR022967)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:13.59,5.70,40.14,235.43,3.94,41.04,6.66,31.88
Arabidopsis thaliana homolog:	AT5G30510.1

Automatic updates:

Name:	NM_001252951 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 30S ribosomal protein S1, chloroplastic-like (LOC100812847), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:63702233..63702322 (+ strand)
Length:	90
Type:	five_prime_UTR

Position:	Chr01:63702323..63702622 (+ strand)
Length:	300
Type:	CDS

Position:	Chr01:63702736..63703011 (+ strand)
Length:	276
Type:	CDS

Position:	Chr01:63703105..63703185 (+ strand)
Length:	81
Type:	CDS

Position:	Chr01:63703690..63703971 (+ strand)
Length:	282
Type:	CDS

Position:	Chr01:63704039..63704149 (+ strand)
Length:	111
Type:	CDS

Position:	Chr01:63704945..63705031 (+ strand)
Length:	87
Type:	CDS

Position:	Chr01:63705441..63705545 (+ strand)
Length:	105
Type:	CDS

Position:	Chr01:63705546..63705711 (+ strand)
Length:	166
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G509400.01
GATGTTAAAC ATTATCCTGT TTGTGAAAGT TTGAGGAAAA AGTTAGAGTG ATAAGAACGG GACATTATCC GTAGCAATGG
CACCACACAA ATGGCTTCTC TTGTTCTTCA ATTCACTGCT CTCAAGTGCT CTCCACTCTC TTCTTCTTTT CTCTCCCAAC
CTTCCCTTTT CACCCAACAT CGCCATAACC AAAGGCGCGC TTCAACTTCC ATAGTCAACT CTGTAGCATT GGCCAATGCA
CAGAACAAAG AGAGAGTCCA GCTCAAGAAG CTCTTCGAAG AAGCCTATGA GAGATGCCGT ACTGCTCCCA TGGAAGGGGT
CTCCTTCACC CTCGAAGATT TCACTGCTGC TCTCGACAAG TATGATTTTG ATTCTGAAGT TGGCTCCAAG GTTAAAGGCA
CTGTGTTCTA CACAGATAAC AATGGAGCAG TTGTTGACAT CACTGCAAAG TCCTCGGCGT ATTTGCCGCT GCAAGAAGCG
AGCATCCGCA GGGTTAGGCA CGTGGAAGAG GCGGGCATAG TTGCTGGATT GAGAGAGGAG TTTTTGATCA TTGGTGAGAA
TCAAGCGGAT GATAGCTTGA TCTTGAGTTT AAGGTCGATT CAGTATGATC TTGCATGGGA ACGTTGCAGG CAGCTTCAGG
CAGAAGATGC TGCTGTCAAG GGTAAGATTG TGGGGGTGAA CAAAGGTGGA GTGGTGGCTG AGGTTGAAGG GCTTAGAGGG
TTTGTTCCAT TGTCACAATT GTCAACGAAC TCCAATATAG AAGAGCTTCT TGAGAAGGAG CTTCCTCTTA AGTTTGTGGA
GGTGGATGAG GAACAATCTA GACTTGTCCT CAGTAACCGC AAGGCCATAG CTGGCAACCA GGCACAGCTA GGAATTGGTT
CAGTGGTTAC TGGCTCTGTT CAAAGCCTGA AGCCATATGG TGCCTTCATT GACATTGGTG GAATCAATGG CCTCCTTCAC
GTTAGTCAGA TCAGTCATGA CCGTGTAACT GATATCTCAA CTGTTCTTCA ACCTGGCGAC ATATTAAAGG TGATGATCTT
AAGTCATGAC CGTGAGAGAG GTCGAGTAAG TCTTTCAACT AAGAAGTTAG AGCCCACACC TGGAGACATG ATCCGCAATC
CAAAGATTGT CTTTGAGAAG GCTGAGGAGA TGGCTCAAAC ATTCAGACAG AGAATAGCCC AAGCAGAAGC TATGGCTCGT
GCTGACATGC TTAGGTTCCA GCCTGAGAGT GGATTGACTC TCAGCAGTGA TGGGATCCTG GGACAATTTA CTTCAGACTT
GCCTGAAGAG GGACTAGATC TGACTGAGGT GCCACCAGCT GAAGCATCAT GATTGAGAAT TTCGAGGTTT TTTTTGCTTA
CATTTTATAA TGTTGCTTGT AACAATCCAA TATTGTTGTC GAACGATGTA TTGATGCAAA TGTATTATTG AGTCAAATAA
ATAGAACTAT TAATACTATC ATTACACTAT GAAGTGATTC TTCACTAGAA TATATTCA

[show][hide][copy]CDS

>Vigan.01G509400.01
ATGGCTTCTC TTGTTCTTCA ATTCACTGCT CTCAAGTGCT CTCCACTCTC TTCTTCTTTT CTCTCCCAAC CTTCCCTTTT
CACCCAACAT CGCCATAACC AAAGGCGCGC TTCAACTTCC ATAGTCAACT CTGTAGCATT GGCCAATGCA CAGAACAAAG
AGAGAGTCCA GCTCAAGAAG CTCTTCGAAG AAGCCTATGA GAGATGCCGT ACTGCTCCCA TGGAAGGGGT CTCCTTCACC
CTCGAAGATT TCACTGCTGC TCTCGACAAG TATGATTTTG ATTCTGAAGT TGGCTCCAAG GTTAAAGGCA CTGTGTTCTA
CACAGATAAC AATGGAGCAG TTGTTGACAT CACTGCAAAG TCCTCGGCGT ATTTGCCGCT GCAAGAAGCG AGCATCCGCA
GGGTTAGGCA CGTGGAAGAG GCGGGCATAG TTGCTGGATT GAGAGAGGAG TTTTTGATCA TTGGTGAGAA TCAAGCGGAT
GATAGCTTGA TCTTGAGTTT AAGGTCGATT CAGTATGATC TTGCATGGGA ACGTTGCAGG CAGCTTCAGG CAGAAGATGC
TGCTGTCAAG GGTAAGATTG TGGGGGTGAA CAAAGGTGGA GTGGTGGCTG AGGTTGAAGG GCTTAGAGGG TTTGTTCCAT
TGTCACAATT GTCAACGAAC TCCAATATAG AAGAGCTTCT TGAGAAGGAG CTTCCTCTTA AGTTTGTGGA GGTGGATGAG
GAACAATCTA GACTTGTCCT CAGTAACCGC AAGGCCATAG CTGGCAACCA GGCACAGCTA GGAATTGGTT CAGTGGTTAC
TGGCTCTGTT CAAAGCCTGA AGCCATATGG TGCCTTCATT GACATTGGTG GAATCAATGG CCTCCTTCAC GTTAGTCAGA
TCAGTCATGA CCGTGTAACT GATATCTCAA CTGTTCTTCA ACCTGGCGAC ATATTAAAGG TGATGATCTT AAGTCATGAC
CGTGAGAGAG GTCGAGTAAG TCTTTCAACT AAGAAGTTAG AGCCCACACC TGGAGACATG ATCCGCAATC CAAAGATTGT
CTTTGAGAAG GCTGAGGAGA TGGCTCAAAC ATTCAGACAG AGAATAGCCC AAGCAGAAGC TATGGCTCGT GCTGACATGC
TTAGGTTCCA GCCTGAGAGT GGATTGACTC TCAGCAGTGA TGGGATCCTG GGACAATTTA CTTCAGACTT GCCTGAAGAG
GGACTAGATC TGACTGAGGT GCCACCAGCT GAAGCATCAT GA

[show][hide][copy]PROTEIN

>Vigan.01G509400.01
MASLVLQFTA LKCSPLSSSF LSQPSLFTQH RHNQRRASTS IVNSVALANA QNKERVQLKK LFEEAYERCR TAPMEGVSFT
LEDFTAALDK YDFDSEVGSK VKGTVFYTDN NGAVVDITAK SSAYLPLQEA SIRRVRHVEE AGIVAGLREE FLIIGENQAD
DSLILSLRSI QYDLAWERCR QLQAEDAAVK GKIVGVNKGG VVAEVEGLRG FVPLSQLSTN SNIEELLEKE LPLKFVEVDE
EQSRLVLSNR KAIAGNQAQL GIGSVVTGSV QSLKPYGAFI DIGGINGLLH VSQISHDRVT DISTVLQPGD ILKVMILSHD
RERGRVSLST KKLEPTPGDM IRNPKIVFEK AEEMAQTFRQ RIAQAEAMAR ADMLRFQPES GLTLSSDGIL GQFTSDLPEE
GLDLTEVPPA EAS*