VIGGS:GBrowse

Vigan.01G509800.01

Basic Information:

Name:	Vigan.01G509800.01 Multiple alignment Variant Information
Position:	Chr01:63764360..63768402 (- strand)
Length:	4043

Functional Information:

Description:	Similar to Gibberellin 2-oxidase. [Q4W8C1, Phaseolus angularis]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro:	Oxoglutarate/iron-dependent dioxygenase (IPR005123)
	Non-haem dioxygenase N-terminal domain (IPR026992)
	Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.22,1.09,0.12,1.68,1.01,0.77,0.06
Arabidopsis thaliana homolog:	AT1G47990.1

Automatic updates:

Name:	NM_001329828 NCBI(nuccore)
Organism:	Vigna angularis
Description:	Vigna angularis gibberellin 2-beta-dioxygenase 2 (LOC108338898), mRNA.
PubMed ID:	16116277 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:63764360..63765349 (- strand)
Length:	990
Type:	three_prime_UTR

Position:	Chr01:63765350..63765598 (- strand)
Length:	249
Type:	CDS

Position:	Chr01:63766146..63766500 (- strand)
Length:	355
Type:	CDS

Position:	Chr01:63767965..63768332 (- strand)
Length:	368
Type:	CDS

Position:	Chr01:63768333..63768402 (- strand)
Length:	70
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G509800.01
TTCTTCTTCT CTTCTGTTTT CCCTCTGCAT TCTCTTCAGT CAGTAACAGA TATCTGCAAA ATCTAGAAAA ATGGTGTTGG
CTGCCCGAAA CCCAATGAAG AGCGAAGGGA TTCTCCCGAG AGAGGTTCCC GTGGTGGACT TCTCAGGGGA GAGAGCGGAA
GTGGCGAAGG TGATCGTGAA AGCGTGCGAA GAATACGGTT TCTTCAAAGT GATAAACCAC GGTATCAGCA AGGAAGTTAT
AGCGAAATCT GAAGAAGCAG GTTTCGGTTT CTTTGGGAAA CCGATGGTGG AAAAGAAAGT GGCGGTACCT GCATATGGGT
GCAAGAACAT AGGTGTCAAT GGAGACATGG GTGAGGTCGA GTACCTTCTC CTCAGTGCCA CCACTGACTC CATTGCTCAC
ATTTCCAAAA CCATATCCAC TGACCCATTA AATCTCAGGA AAAGCTTGAG TGCATACACA GAAGCAGTGA AAGAACTAGC
ATGTGAGATA TTGGAGGTGA TGGCAGAGGG GCTGGGGGTC CCGGACACTT GGGTTTTCAG CAGATTGATA AGGGATGGTG
AAAGTGACTC AGTGCTGAGA CTCAATCACT ACCCACCTAT AATTAACAGA GATAAGGACA AGTCATCACA AATTACCAAG
GTTGGGTTTG GGGAGCATTC TGACCCTCAG ATCCTTACCA TTCTCCGATC CAACGACGTC GGAGGCCTCC AAATTTCTCT
TCCAGATGGG GTATGGATCC CAGTCACACC TGACCCCTCT GCATTCTATG TCAACGTCGG TGATGTACTA CAGGTTATGA
CAAATGGAAG ATTTGTGAGC GTGAGACACA GGGCAATGAC GAACTCATAC AAGTGTAGAA TGTCAGTGGC ATATTTTGGG
GCTCCACCTC TGCATCAAAC CATTGTTGCT CCCTCAGTTA TGGTGACACC TCAGAGGCCC TCTCTCTTCC GACCATTCAC
TTGGGCCGAA TACAAGAAAG CCACATATTC TCTCAGGCTT GGAGACACAC GCCTTCAGCT TTTCAGAAAC TGCAAACGCT
GACCACCACT CACTCTTTTC CTCTGCTTCC CCATTTTTTT CCATACTCTC CCCACTCATT ATTAACTTCA CTACCCTAAG
ATAACTTCTC TGTACTCCTT TCCACCAATC ATCATAAATT CCAATCCTTC AACTTTCTCT CTCTCTCTCT CTCTTCTTTC
CTTCTAACCA AAATTATACA TCTCTTTCTT TTATTTATCT GCTATGCTAA CTTCAACTAC CCTATTTTTT TAACGATAAC
AAACATTTCC TTTTATATAT TAACATTTGA TTATAAAGTT CATTTTCAAT ACTTCAAAAA ATCTCCCTTT TGACTACTTA
GTCAATACCC CTGGAAAAAT AAAAGCAAGA CTCAATTGAA TTCAGTCCTA AAGTAAGATT TCTTTCACTA GATATATCAA
TCCTTCAATT AGCAAAGATT TACAAAAGTA CTCTGGTGGT ACAATAACCG GTTCTTATAG AACTAGTGTG ACTACTGTTC
AAATATATGA TACACTGATG CCACACATGG CATGGAGTGA GTTACCCCGC ATAAATAAAT GATGCAATAT AACTGTTATA
CTGTTATCCG TTGTCACCAA ACAACATAAA TAGTTAACAT GCATAATCAA TTATTGCAAT ACATTAGTTC ACCAAACAAT
GGCACTCTAG TGGGAGAATG TTGACGTTAA ACAAGAAACT GAGACCTTGA AGCAAAACGG GAACACTTTC TTCTACCAGT
TTTGCTTAGC ATGCAGACAC AGTTCTGAAG AAGTTCAAAA TCCTCCTCCC AAAACAACAA GGATGCCTTT TCTGGATTTT
CTAGAAGCAT CTTTGAGGTC AAGAAACCAG CAATGGTCCA TGTCTGCATC AACCGTGATT GCTTCCCAAT GAACCTTCCA
TTTCGTGTGT CGTAATATTC GGGCCATTTA TCCAATGAAA GCCTTTTCCC TGCTGAATCA ACAGCCTTCT GTGCCAAGTC
GGGCCTTCCC ATCTTCATGC AGGCTAATGT GA

[show][hide][copy]CDS

>Vigan.01G509800.01
ATGGTGTTGG CTGCCCGAAA CCCAATGAAG AGCGAAGGGA TTCTCCCGAG AGAGGTTCCC GTGGTGGACT TCTCAGGGGA
GAGAGCGGAA GTGGCGAAGG TGATCGTGAA AGCGTGCGAA GAATACGGTT TCTTCAAAGT GATAAACCAC GGTATCAGCA
AGGAAGTTAT AGCGAAATCT GAAGAAGCAG GTTTCGGTTT CTTTGGGAAA CCGATGGTGG AAAAGAAAGT GGCGGTACCT
GCATATGGGT GCAAGAACAT AGGTGTCAAT GGAGACATGG GTGAGGTCGA GTACCTTCTC CTCAGTGCCA CCACTGACTC
CATTGCTCAC ATTTCCAAAA CCATATCCAC TGACCCATTA AATCTCAGGA AAAGCTTGAG TGCATACACA GAAGCAGTGA
AAGAACTAGC ATGTGAGATA TTGGAGGTGA TGGCAGAGGG GCTGGGGGTC CCGGACACTT GGGTTTTCAG CAGATTGATA
AGGGATGGTG AAAGTGACTC AGTGCTGAGA CTCAATCACT ACCCACCTAT AATTAACAGA GATAAGGACA AGTCATCACA
AATTACCAAG GTTGGGTTTG GGGAGCATTC TGACCCTCAG ATCCTTACCA TTCTCCGATC CAACGACGTC GGAGGCCTCC
AAATTTCTCT TCCAGATGGG GTATGGATCC CAGTCACACC TGACCCCTCT GCATTCTATG TCAACGTCGG TGATGTACTA
CAGGTTATGA CAAATGGAAG ATTTGTGAGC GTGAGACACA GGGCAATGAC GAACTCATAC AAGTGTAGAA TGTCAGTGGC
ATATTTTGGG GCTCCACCTC TGCATCAAAC CATTGTTGCT CCCTCAGTTA TGGTGACACC TCAGAGGCCC TCTCTCTTCC
GACCATTCAC TTGGGCCGAA TACAAGAAAG CCACATATTC TCTCAGGCTT GGAGACACAC GCCTTCAGCT TTTCAGAAAC
TGCAAACGCT GA

[show][hide][copy]PROTEIN

>Vigan.01G509800.01
MVLAARNPMK SEGILPREVP VVDFSGERAE VAKVIVKACE EYGFFKVINH GISKEVIAKS EEAGFGFFGK PMVEKKVAVP
AYGCKNIGVN GDMGEVEYLL LSATTDSIAH ISKTISTDPL NLRKSLSAYT EAVKELACEI LEVMAEGLGV PDTWVFSRLI
RDGESDSVLR LNHYPPIINR DKDKSSQITK VGFGEHSDPQ ILTILRSNDV GGLQISLPDG VWIPVTPDPS AFYVNVGDVL
QVMTNGRFVS VRHRAMTNSY KCRMSVAYFG APPLHQTIVA PSVMVTPQRP SLFRPFTWAE YKKATYSLRL GDTRLQLFRN
CKR*