VIGGS:GBrowse

Vigan.01G510000.01

Basic Information:

Name:	Vigan.01G510000.01 Multiple alignment Variant Information
Position:	Chr01:63778844..63781998 (- strand)
Length:	3155

Functional Information:

Description:	Similar to transcription initiation factor TFIID subunit 9-like isoform X2. [XP_004508112.1, Cicer arietinum]
GO:	Biological Process: DNA-dependent transcription, initiation (GO:0006352)
GO:	Molecular Function: protein heterodimerization activity (GO:0046982)
InterPro:	Transcription initiation factor TAFII31 (IPR003162)
InterPro:	Histone-fold (IPR009072)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:65.04,34.44,12.35,13.14,15.69,16.19,11.25,10.53
Arabidopsis thaliana homolog:	AT1G54140.1

Automatic updates:

Name:	NM_001248657 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527659 (LOC100527659), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249456 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max transcription initiation factor TFIID subunit 9-like (LOC100306277), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:63778844..63779181 (- strand)
Length:	338
Type:	three_prime_UTR

Position:	Chr01:63779182..63779451 (- strand)
Length:	270
Type:	CDS

Position:	Chr01:63781426..63781689 (- strand)
Length:	264
Type:	CDS

Position:	Chr01:63781690..63781998 (- strand)
Length:	309
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G510000.01
CACCATGGGT ACTGTAAAGT AACAACTCCC CCTTCTACGA AGAAAAATTA AATTTCTGTT GAACGATGGG CAGACAGAAA
GATAAAACTG GGAAGTGCGA ATAACAAAGC CCATGGGCCA CAGTGTTTTC ATTTGAGCCT TTTAAAATTC CGACTCACGA
GGCCCATGCA AAAGGAAGTT TTCGTGCCCT AGACTTCTCC CAAAGTCTTT CTAGGCGAAT AACCAGCATC CGTCCGACAC
CGTCCACGGC GATTCCGGCC ACCGTGCGTT TGAATTACAT TTTGTCTTCC GGTGGAGCAG TAGCGAGGTA TGGGTGACAA
AGACGAAGAG TCGGGAATGC CAAGGGATGC AAAGATTGTG AAGTCTTTGT TGAAGTCAAT GGGCGTGGAG GAGTACGAGC
CTCGCGTCAT TCACAAGTTC CTTGAACTGT GGTATCGATA CGTCGTCGAT GTATTAACCG ATGCACAAGT CTATTCAGAG
CACGCCGGAA AATCCTCAAT CGATTGTGAC GATGTCAAGC TTGCGATTCA ATCCAAGATT AACTTCAGTT TCTCGCAACC
ACCACCTCGT GAGGTGCTGC TGGAGTTGGC TCAGAACCGC AACAAGATAC CATTGCCAAA GACTATAGCA GGACCCGGTA
TCCCACTTCC GCCTGACCAG GACACATTAA TCAGTCCAAA CTACCAGTTT GGAATTCGAA ACAAAAGGCC TGCCGAACCT
CTAGAAGAAA CAGAGGATGA AGAAACTACC ATTCCCAATC CCACTCAGGA AGACAAGGTA GAGCTGCAGC AGAATCCCCA
TCAGAGAGTT TCATTTCCCC TGCCCAAACG CCAAAAGGAT TAATTTGAAT TCCCTTATGT GACATGTTTT AGTCTAACTT
TTGTGTAATT GTTGTACAAC AGTATTATTA GCTACAAAAT CTCTATAAAC GATACCATGT TTGTTTTATT GTGTAACATT
CACTAGGTTT TGACATTATA ATGAAATGAA AAAGTTTCCA AACGGTTCAT TCTGCTTGGA ATATGTACAT GTGATTCGTT
TCAAAGTCCA TGTGAACATT GTCTGTCGGT TGGTTTGGAG CTTGCAAACT GTGAAATGAC ATTCAATTTA AAAAATTTGT
AATGAGTTGA GGTGTTTTTT CTGTTTTCAG TTAGGTTTGT ATATAGAAAA TTTGAGCTGA G

[show][hide][copy]CDS

>Vigan.01G510000.01
ATGGGTGACA AAGACGAAGA GTCGGGAATG CCAAGGGATG CAAAGATTGT GAAGTCTTTG TTGAAGTCAA TGGGCGTGGA
GGAGTACGAG CCTCGCGTCA TTCACAAGTT CCTTGAACTG TGGTATCGAT ACGTCGTCGA TGTATTAACC GATGCACAAG
TCTATTCAGA GCACGCCGGA AAATCCTCAA TCGATTGTGA CGATGTCAAG CTTGCGATTC AATCCAAGAT TAACTTCAGT
TTCTCGCAAC CACCACCTCG TGAGGTGCTG CTGGAGTTGG CTCAGAACCG CAACAAGATA CCATTGCCAA AGACTATAGC
AGGACCCGGT ATCCCACTTC CGCCTGACCA GGACACATTA ATCAGTCCAA ACTACCAGTT TGGAATTCGA AACAAAAGGC
CTGCCGAACC TCTAGAAGAA ACAGAGGATG AAGAAACTAC CATTCCCAAT CCCACTCAGG AAGACAAGGT AGAGCTGCAG
CAGAATCCCC ATCAGAGAGT TTCATTTCCC CTGCCCAAAC GCCAAAAGGA TTAA

[show][hide][copy]PROTEIN

>Vigan.01G510000.01
MGDKDEESGM PRDAKIVKSL LKSMGVEEYE PRVIHKFLEL WYRYVVDVLT DAQVYSEHAG KSSIDCDDVK LAIQSKINFS
FSQPPPREVL LELAQNRNKI PLPKTIAGPG IPLPPDQDTL ISPNYQFGIR NKRPAEPLEE TEDEETTIPN PTQEDKVELQ
QNPHQRVSFP LPKRQKD*