VIGGS:GBrowse

Vigan.01G522700.01

Basic Information:

Name:	Vigan.01G522700.01 Multiple alignment Variant Information
Position:	Chr01:64731951..64735525 (+ strand)
Length:	3575

Functional Information:

Description:	Similar to Alanyl-tRNA synthetase. [G7JLH0, Medicago truncatula]
GO:	Biological Process: alanyl-tRNA aminoacylation (GO:0006419)
	Biological Process: tRNA aminoacylation (GO:0043039)
	Molecular Function: nucleotide binding (GO:0000166)
	Molecular Function: nucleic acid binding (GO:0003676)
	Molecular Function: alanine-tRNA ligase activity (GO:0004813)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: ligase activity, forming aminoacyl-tRNA and related compounds (GO:0016876)
InterPro:	Translation protein, beta-barrel domain (IPR009000)
	Threonyl/alanyl tRNA synthetase, SAD (IPR012947)
	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (IPR018163)
	Alanyl-tRNA synthetase, class IIc, N-terminal (IPR018164)
	Alanyl-tRNA synthetase, class IIc, core domain (IPR018165)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:40.21,27.20,38.00,39.47,27.86,17.62,112.02,26.63
Arabidopsis thaliana homolog:	AT3G16565.2

Automatic updates:

Name:	NM_001255306 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max alanyl-tRNA editing protein AlaX-L-like (LOC100781401), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:64731951..64732113 (+ strand)
Length:	163
Type:	five_prime_UTR

Position:	Chr01:64732114..64732209 (+ strand)
Length:	96
Type:	CDS

Position:	Chr01:64732348..64732494 (+ strand)
Length:	147
Type:	CDS

Position:	Chr01:64732604..64732716 (+ strand)
Length:	113
Type:	CDS

Position:	Chr01:64733050..64733142 (+ strand)
Length:	93
Type:	CDS

Position:	Chr01:64733650..64733752 (+ strand)
Length:	103
Type:	CDS

Position:	Chr01:64733824..64733898 (+ strand)
Length:	75
Type:	CDS

Position:	Chr01:64734848..64734943 (+ strand)
Length:	96
Type:	CDS

Position:	Chr01:64735206..64735265 (+ strand)
Length:	60
Type:	CDS

Position:	Chr01:64735266..64735525 (+ strand)
Length:	260
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G522700.01
TTAAAGGATA ACTACTAAAC AAACCTACCC ATTATATAAT TCTTTCACGG TACAGAAACT TTCTATTTAT CGATCACGTC
AAAATCGGTG ACTATTTGAG TATGAAGCAT TTACGGGGTC AGGTATGATC CGAAACGAAG AACCATAGAT TCAGGATTCG
GTTATGGCCA TGGATTTGTA CAAGAATCCC ACGAAGCTCG AATACTACGA TGACATGTGG AGCCTCCAGT GCACTGCCAC
ATTATTATCT CACTTCAAGG GCGATGATGG TAGACATGTT TTGATATTGG ACCGTACGAT ATTCCATCCG CAAGGAGGTG
GTCAACCCGC GGATACTGGC TTTGTACTCA TTCATGGCTT AGAAAACAAA TTTCTGGTAT CTGATGTTCG ATCCAAAGAT
GGAATTGTTT TTCACTATGG GCTCTTTGAG AATTTGGGAG GGGAATTTGA GCCTACACAC GAGAAAGGGA ATGAGGTTTC
ACTGTTTGTT GACGAGCAGA GGCGAAAACT GAACTCCAGA TTGCATTCAG CGGGACATTT GCTTGATATT TGTCTGCAAA
GAATAGGATT GGGTCATTTA GAGCCTGGCA AAGCCTACCA TTTTTCTGAT GGGCCTTGGG TTGAATATAA GGGTACAGTT
CCACAAAATG AATTGCAGAG TAAGCAAAAG GATCTAGAGC TGGAGGCCAA TGCATTAATT TCCTCGGGAG AAAGAATTTC
TGTTGATGTA TTACCATATG ATGAAGCTGC TAAGATTTGC GGAGGGAGTC TTCCTGATTA TATTTCTAAG GAAAGCACAC
CTCGCATTGT GAGGATAGGA GATAATCCTG GCTGCCCATG TGGTGGTACT CATGTTGCTG ACATTTCAGA CATCGTACAA
ATTAAGGTCT CGCAAATTCG CTCGAAGAAG GGGCAAACAA AAGTCTCTTA CAAAGTGGAA TCCTAGTTAT ATGCGGTTGA
GTCTGCTGCT GTGAAACTGC TATTTTAGCT CCGTACTTTT CTGACTACTC TCTGATAAGC ATCGCCGAAA ACTAGCTGAT
AGTAGTTTCT ATTTAGGTCC TCAATAAATA AACTTCTTTT GTAAACATTT ACAAAAGAAA ACAAGATTGT AAAAGAAACA
AAGATTTTAT TCAAGTTAAA ATCATCTCAT GTATTATGTA ACTGAGAAAA AATGTCATTG TATCTTAGTT TACTCCTACT
CACATG

[show][hide][copy]CDS

>Vigan.01G522700.01
ATGGCCATGG ATTTGTACAA GAATCCCACG AAGCTCGAAT ACTACGATGA CATGTGGAGC CTCCAGTGCA CTGCCACATT
ATTATCTCAC TTCAAGGGCG ATGATGGTAG ACATGTTTTG ATATTGGACC GTACGATATT CCATCCGCAA GGAGGTGGTC
AACCCGCGGA TACTGGCTTT GTACTCATTC ATGGCTTAGA AAACAAATTT CTGGTATCTG ATGTTCGATC CAAAGATGGA
ATTGTTTTTC ACTATGGGCT CTTTGAGAAT TTGGGAGGGG AATTTGAGCC TACACACGAG AAAGGGAATG AGGTTTCACT
GTTTGTTGAC GAGCAGAGGC GAAAACTGAA CTCCAGATTG CATTCAGCGG GACATTTGCT TGATATTTGT CTGCAAAGAA
TAGGATTGGG TCATTTAGAG CCTGGCAAAG CCTACCATTT TTCTGATGGG CCTTGGGTTG AATATAAGGG TACAGTTCCA
CAAAATGAAT TGCAGAGTAA GCAAAAGGAT CTAGAGCTGG AGGCCAATGC ATTAATTTCC TCGGGAGAAA GAATTTCTGT
TGATGTATTA CCATATGATG AAGCTGCTAA GATTTGCGGA GGGAGTCTTC CTGATTATAT TTCTAAGGAA AGCACACCTC
GCATTGTGAG GATAGGAGAT AATCCTGGCT GCCCATGTGG TGGTACTCAT GTTGCTGACA TTTCAGACAT CGTACAAATT
AAGGTCTCGC AAATTCGCTC GAAGAAGGGG CAAACAAAAG TCTCTTACAA AGTGGAATCC TAG

[show][hide][copy]PROTEIN

>Vigan.01G522700.01
MAMDLYKNPT KLEYYDDMWS LQCTATLLSH FKGDDGRHVL ILDRTIFHPQ GGGQPADTGF VLIHGLENKF LVSDVRSKDG
IVFHYGLFEN LGGEFEPTHE KGNEVSLFVD EQRRKLNSRL HSAGHLLDIC LQRIGLGHLE PGKAYHFSDG PWVEYKGTVP
QNELQSKQKD LELEANALIS SGERISVDVL PYDEAAKICG GSLPDYISKE STPRIVRIGD NPGCPCGGTH VADISDIVQI
KVSQIRSKKG QTKVSYKVES *