GBrowse Details

Vigan.01G522700.01

Basic Information:
Name: Vigan.01G522700.01
Multiple alignment
Variant Information
Position: Chr01:64731951..64735525 (+ strand)
Length: 3575
Functional Information:
Description: Similar to Alanyl-tRNA synthetase. [G7JLH0, Medicago truncatula]
GO: Biological Process: alanyl-tRNA aminoacylation (GO:0006419)
Biological Process: tRNA aminoacylation (GO:0043039)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: alanine-tRNA ligase activity (GO:0004813)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ligase activity, forming aminoacyl-tRNA and related compounds (GO:0016876)
InterPro: Translation protein, beta-barrel domain (IPR009000)
Threonyl/alanyl tRNA synthetase, SAD (IPR012947)
Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (IPR018163)
Alanyl-tRNA synthetase, class IIc, N-terminal (IPR018164)
Alanyl-tRNA synthetase, class IIc, core domain (IPR018165)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.21,27.20,38.00,39.47,27.86,17.62,112.02,26.63
Arabidopsis thaliana homolog: AT3G16565.2
Automatic updates:
Name: NM_001255306 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alanyl-tRNA editing protein AlaX-L-like (LOC100781401), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:64731951..64732113 (+ strand)
Length: 163
Type: five_prime_UTR
Position: Chr01:64732114..64732209 (+ strand)
Length: 96
Type: CDS
Position: Chr01:64732348..64732494 (+ strand)
Length: 147
Type: CDS
Position: Chr01:64732604..64732716 (+ strand)
Length: 113
Type: CDS
Position: Chr01:64733050..64733142 (+ strand)
Length: 93
Type: CDS
Position: Chr01:64733650..64733752 (+ strand)
Length: 103
Type: CDS
Position: Chr01:64733824..64733898 (+ strand)
Length: 75
Type: CDS
Position: Chr01:64734848..64734943 (+ strand)
Length: 96
Type: CDS
Position: Chr01:64735206..64735265 (+ strand)
Length: 60
Type: CDS
Position: Chr01:64735266..64735525 (+ strand)
Length: 260
Type: three_prime_UTR

>Vigan.01G522700.01 class=Sequence position=Chr01:64731951..64735525 (+ strand)
TTAAAGGATA ACTACTAAAC AAACCTACCC ATTATATAAT TCTTTCACGG TACAGAAACT TTCTATTTAT CGATCACGTC
AAAATCGGTG ACTATTTGAG TATGAAGCAT TTACGGGGTC AGGTATGATC CGAAACGAAG AACCATAGAT TCAGGATTCG
GTTATGGCCA TGGATTTGTA CAAGAATCCC ACGAAGCTCG AATACTACGA TGACATGTGG AGCCTCCAGT GCACTGCCAC
ATTATTATCT CACTTCAAGG TTAATTTCTA TTACTTCTTG ATTTTTAGTT AGTTATTCAA CTGATAATTT TTGCGAAATG
ACAAATATGG GAAAGGGCGA AGGACTATAC AGAGAAGGAA ATCTTAACTC GCTTCGTTAT TGATGTAAAA TGAAAAGGGC
GATGATGGTA GACATGTTTT GATATTGGAC CGTACGATAT TCCATCCGCA AGGAGGTGGT CAACCCGCGG ATACTGGCTT
TGTACTCATT CATGGCTTAG AAAACAAATT TCTGGTATCT GATGTTCGAT CCAAAGATGG AATTGTAAGT TTCAAGAATG
AAAGGTCTTT TTTGTTGTCG AACATGTCTC TGGAGTGGTC ATCAATTATT TTGTAGACAT CCTCTTTTTT TTTTTATTAT
TATGATGATG TAGGTTTTTC ACTATGGGCT CTTTGAGAAT TTGGGAGGGG AATTTGAGCC TACACACGAG AAAGGGAATG
AGGTTTCACT GTTTGTTGAC GAGCAGAGGC GAAAACTGAA CTCCAGGTTA ACTTTATTTT TTTTTCAGGG GATGAAATTC
TTCAGACATT TATCTTTGTG TTCTTCTTTC CTTTCCTTTT AGATTGAGTT GAGATATCCC ACATATCTGA TTTGTTTTAC
ATAAATTATT TTTCTGAAGC GTACTTTTTA TTTTTCTTGT GTAGCTAGGG AAATGATTTA CCATCTGTAC AAATTTTTTA
ATTACTACTT TTTTTTAGAG TGTATGATTA CTGCCAGGCA GTTTTTCTAT TTTGAATCTA TGATTACTGC ACTGCTTATA
AGAAAATTTA TAATTCTGTT TCTGTAAATC TCATTTTTCC TTGCTTATTT CCTGTGTAGA TTGCATTCAG CGGGACATTT
GCTTGATATT TGTCTGCAAA GAATAGGATT GGGTCATTTA GAGCCTGGCA AAGCCTACCA TTTTTCTGAT GGGTATATCA
TTTTACTGCT TTTTATGCTT TTGGTGTGTA CTGAATTCAT GGCTTGGATA TGAGTGCATA ATCTGAACTA GGTTTGAGAC
TTGAAAGTTA TCTGTCTAAT ACTCAAGCTA AGAGGCATTG TTCAAGTTAT CAAATCATTG CTGATCTAGG ATAATATTAA
TGATGATTAA GTGGGTTTAT TAGAAGTCTA CAAATACAAT AAATCCTTAA ATTGGTCATA AAGATTAGCG TGGTGCCACC
TTAGTCTTCT AGTGGCTTTT TAGCCAGTCC TTTATAATAT AGAATTTAGT TATGTTTAGA TCTTTGAGGG ACTCGTATGG
TGAAAAAAAT CTTCGCAAGA CTAATAGAAT AACAAAATAA TAGTTTCTTT TGAGGGTTTT CTCAAAACAA AGATCTTACA
ATTGCTAAAC TCCTGCTGTT GTAATCCCAT AAGTATTCGG TTTAAATGTG TTCCTAAGTT ACGAAGTTTG CTCCGTACTG
GCTATTGCAT CATTTCCAGG CCTTGGGTTG AATATAAGGG TACAGTTCCA CAAAATGAAT TGCAGAGTAA GCAAAAGGAT
CTAGAGCTGG AGGCCAATGC ATTAATTTCC TCGGGAGAAA GAGTAAGTTG TTATGTTCGT AAATTGCTTT TTATGTGACA
TCAGGCTCTG AAAATCTTCA CCTTACGATA CAGATTTCTG TTGATGTATT ACCATATGAT GAAGCTGCTA AGATTTGCGG
AGGGAGTCTT CCTGATTATA TTTCTAAGGT CAGTCTATAA AAGATATATT CTTGCTGCAA ATGGTGTTTC TATCCACATT
GTAGCAGCCT TCATAAGTCC TAACTATGGA AATCTAAGAA ACTCTTGATC CAGCCATTGT GAATGTGATG AAATCAGTTC
AAGTCTTAAT ATCGGTACCA GTGAAGGAAC ACGGCTGTTT TCCCTTCGCT GCCTTCTTGT ATTTGATTGT TTTTGTCGGT
GAGTATGACT GACTTCTTGC CCTATATTTA AACCAATCTG GAGAGGGTCA TATACTAGAC TTCGATCATG TTGGTTGACT
GTTTTGAAAA ACTGTTTATG AATTCTCAAA TTTACAGTCA CGTGAGGATA TTTTAACGTG TTTGTCTATT GAGCACATTT
TTGTTCTCTA AAAATTTGTC TTTGTAGTAC TTAAAGAAAG CAGAAAAAGA GAATGAGAAA ACATTCCAAC TATTTCTTTT
TTTTTTTTTT TCTTGAAACA CCTGTTTTGA AAATAATTGT CAAAACTCTA CAGATTTTAG ATGAGAAATT GATTTACGAG
TTGTGTGAAA TTGTTTTAAT CTATTAAAAT GGTTTTTTGA AGTAACTGTG TTCTATGTTT TCCGTTTTTT GTTGACGTCT
AAATCAATGT ATTATTATTC ACACTGCCTT ATTATTTGTA TAGAGTATGA AATCGGTGGT TGTATCTGGT AAGCAGTTTT
ATAATGTCAG ATATCTTCAA CGCCCAAGCT ACAGGGTCCT TGCTTATGTG GCGCTTTCTT AGAATGGAAC TGTAGCAATT
CTTTTAAATT AGCTGACGGG TAGCATTCAC TGTCTCACAT ATGTGTACAT CACACGCTTA TGCATATATT AAAGTATACA
AAACTATGTT AAGTTCATCT CTAGCATGAA TCTGGTTTTG TTCTTATTTT CTGCACCACT ACATTATGTT TCAATATTGA
TGCATCCACT CTCACAGGAA AGCACACCTC GCATTGTGAG GATAGGAGAT AATCCTGGCT GCCCATGTGG TGGTACTCAT
GTTGCTGACA TTTCAGACAT CGTACAAATT AAGGTATGGA ATCCATTATT TGAACTAGCT GCTAGTTTGG TTTGATATGA
TATTTTTTGT GTAAGTTTGC TCTTTGTAAT CAGCAGGCTT CACTCTTTGT AAGTAGCACC AATGAATTTC TTTCATTGAA
ACTGTTGAAA ATGAAAATTT TGTTGTTCAA AGACCTAATA CTTAGTTTAT AAAATGATAG ACTTTTTTTA GTTTTATTTG
GTTGCTTGGT AACAATTTTG TGCTATATGC TTCTATAATC TGTGTATATG ATCAGGTCTC GCAAATTCGC TCGAAGAAGG
GGCAAACAAA AGTCTCTTAC AAAGTGGAAT CCTAGTTATA TGCGGTTGAG TCTGCTGCTG TGAAACTGCT ATTTTAGCTC
CGTACTTTTC TGACTACTCT CTGATAAGCA TCGCCGAAAA CTAGCTGATA GTAGTTTCTA TTTAGGTCCT CAATAAATAA
ACTTCTTTTG TAAACATTTA CAAAAGAAAA CAAGATTGTA AAAGAAACAA AGATTTTATT CAAGTTAAAA TCATCTCATG
TATTATGTAA CTGAGAAAAA ATGTCATTGT ATCTTAGTTT ACTCCTACTC ACATG

>Vigan.01G522700.01
TTAAAGGATA ACTACTAAAC AAACCTACCC ATTATATAAT TCTTTCACGG TACAGAAACT TTCTATTTAT CGATCACGTC
AAAATCGGTG ACTATTTGAG TATGAAGCAT TTACGGGGTC AGGTATGATC CGAAACGAAG AACCATAGAT TCAGGATTCG
GTTATGGCCA TGGATTTGTA CAAGAATCCC ACGAAGCTCG AATACTACGA TGACATGTGG AGCCTCCAGT GCACTGCCAC
ATTATTATCT CACTTCAAGG GCGATGATGG TAGACATGTT TTGATATTGG ACCGTACGAT ATTCCATCCG CAAGGAGGTG
GTCAACCCGC GGATACTGGC TTTGTACTCA TTCATGGCTT AGAAAACAAA TTTCTGGTAT CTGATGTTCG ATCCAAAGAT
GGAATTGTTT TTCACTATGG GCTCTTTGAG AATTTGGGAG GGGAATTTGA GCCTACACAC GAGAAAGGGA ATGAGGTTTC
ACTGTTTGTT GACGAGCAGA GGCGAAAACT GAACTCCAGA TTGCATTCAG CGGGACATTT GCTTGATATT TGTCTGCAAA
GAATAGGATT GGGTCATTTA GAGCCTGGCA AAGCCTACCA TTTTTCTGAT GGGCCTTGGG TTGAATATAA GGGTACAGTT
CCACAAAATG AATTGCAGAG TAAGCAAAAG GATCTAGAGC TGGAGGCCAA TGCATTAATT TCCTCGGGAG AAAGAATTTC
TGTTGATGTA TTACCATATG ATGAAGCTGC TAAGATTTGC GGAGGGAGTC TTCCTGATTA TATTTCTAAG GAAAGCACAC
CTCGCATTGT GAGGATAGGA GATAATCCTG GCTGCCCATG TGGTGGTACT CATGTTGCTG ACATTTCAGA CATCGTACAA
ATTAAGGTCT CGCAAATTCG CTCGAAGAAG GGGCAAACAA AAGTCTCTTA CAAAGTGGAA TCCTAGTTAT ATGCGGTTGA
GTCTGCTGCT GTGAAACTGC TATTTTAGCT CCGTACTTTT CTGACTACTC TCTGATAAGC ATCGCCGAAA ACTAGCTGAT
AGTAGTTTCT ATTTAGGTCC TCAATAAATA AACTTCTTTT GTAAACATTT ACAAAAGAAA ACAAGATTGT AAAAGAAACA
AAGATTTTAT TCAAGTTAAA ATCATCTCAT GTATTATGTA ACTGAGAAAA AATGTCATTG TATCTTAGTT TACTCCTACT
CACATG

>Vigan.01G522700.01
ATGGCCATGG ATTTGTACAA GAATCCCACG AAGCTCGAAT ACTACGATGA CATGTGGAGC CTCCAGTGCA CTGCCACATT
ATTATCTCAC TTCAAGGGCG ATGATGGTAG ACATGTTTTG ATATTGGACC GTACGATATT CCATCCGCAA GGAGGTGGTC
AACCCGCGGA TACTGGCTTT GTACTCATTC ATGGCTTAGA AAACAAATTT CTGGTATCTG ATGTTCGATC CAAAGATGGA
ATTGTTTTTC ACTATGGGCT CTTTGAGAAT TTGGGAGGGG AATTTGAGCC TACACACGAG AAAGGGAATG AGGTTTCACT
GTTTGTTGAC GAGCAGAGGC GAAAACTGAA CTCCAGATTG CATTCAGCGG GACATTTGCT TGATATTTGT CTGCAAAGAA
TAGGATTGGG TCATTTAGAG CCTGGCAAAG CCTACCATTT TTCTGATGGG CCTTGGGTTG AATATAAGGG TACAGTTCCA
CAAAATGAAT TGCAGAGTAA GCAAAAGGAT CTAGAGCTGG AGGCCAATGC ATTAATTTCC TCGGGAGAAA GAATTTCTGT
TGATGTATTA CCATATGATG AAGCTGCTAA GATTTGCGGA GGGAGTCTTC CTGATTATAT TTCTAAGGAA AGCACACCTC
GCATTGTGAG GATAGGAGAT AATCCTGGCT GCCCATGTGG TGGTACTCAT GTTGCTGACA TTTCAGACAT CGTACAAATT
AAGGTCTCGC AAATTCGCTC GAAGAAGGGG CAAACAAAAG TCTCTTACAA AGTGGAATCC TAG

>Vigan.01G522700.01
MAMDLYKNPT KLEYYDDMWS LQCTATLLSH FKGDDGRHVL ILDRTIFHPQ GGGQPADTGF VLIHGLENKF LVSDVRSKDG
IVFHYGLFEN LGGEFEPTHE KGNEVSLFVD EQRRKLNSRL HSAGHLLDIC LQRIGLGHLE PGKAYHFSDG PWVEYKGTVP
QNELQSKQKD LELEANALIS SGERISVDVL PYDEAAKICG GSLPDYISKE STPRIVRIGD NPGCPCGGTH VADISDIVQI
KVSQIRSKKG QTKVSYKVES *