GBrowse Details

Vigan.01G523200.01

Basic Information:
Name: Vigan.01G523200.01
Multiple alignment
Variant Information
Position: Chr01:64768795..64772023 (+ strand)
Length: 3229
Functional Information:
Description: Similar to vesicle-associated membrane protein 724-like. [XP_004487861.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Synaptobrevin (IPR001388)
Longin domain (IPR010908)
Longin-like domain (IPR011012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.59,52.31,26.88,32.42,22.40,30.47,57.90,38.05
Automatic updates:
Name: NM_001255448 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vesicle-associated membrane protein-like protein (LOC100781950), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:64768795..64768952 (+ strand)
Length: 158
Type: five_prime_UTR
Position: Chr01:64768953..64769142 (+ strand)
Length: 190
Type: CDS
Position: Chr01:64770127..64770268 (+ strand)
Length: 142
Type: CDS
Position: Chr01:64770383..64770503 (+ strand)
Length: 121
Type: CDS
Position: Chr01:64771052..64771114 (+ strand)
Length: 63
Type: CDS
Position: Chr01:64771555..64771704 (+ strand)
Length: 150
Type: CDS
Position: Chr01:64771705..64772023 (+ strand)
Length: 319
Type: three_prime_UTR


>Vigan.01G523200.01
TCTTCCACAA TTTATTTCTT TCTTTCAGAC CAAGAAAAAG TAGAAACCAA ACGCGGCCTT CAAGTTCCAA ATACCAACAA
CTAAGTAAAC AACTTCTCTT TCCTGTCTCT TTCTCTCTTT CTCTCTCTGC TTCTGAGTTC CGAGTTGCAG AGAGAGCAAT
GAGTCAGGAA TCGTTTATAT ACAGCTTCGT GGCTCGGGGG ACGGTGGTGT TAGCTGAGTA CACCGAGTTC ACCGGGAACT
TCCCTGCAAT TGCAGCTCAG TGTCTCCAGA AACTACCCTC TTCCAATAAC AAGTTCACCT ACAATTGTGA CCACCACACC
TTCAATTTTC TCGTCGAAGA TGGTTACGCT TACTGTGTTG TTGCCAAGGA ATCTGTGAGC AAACAAATCT CTATTGCTTT
CCTAGAACGT GTCAAAGCGG ACTTTAGGAA AAGATATGGG GGTGGAAAGG CTGACACAGC TGTTGCCAAA AGTCTCAACA
AGGAGTTTGG ACCAGTAATG AAAGAGCACA TGAAGTATAT AATAGACCAT GCTGAAGAGA TTGAAAAGCT AATAAAAGTG
AAGGCTCAAG TTTCAGAAGT TAAGAGTATC ATGTTAGAGA ACATTGATAA GGCCATTGAT AGAGGAGAAA ATCTAACTAT
TCTTGCCGAC AAGTCTGAGA CATTGCACTC ACAAGCCCAG GAGTTCAGAA AGAAGGGAAC TCAAGTCCGT CGGAAGATGT
GGTATCAGAA CATGAAAATT AAATTGGTTG TTCTTGGAAT TTTGTTGCTT TTGGTTCTGG TTATCTGGCT TTCTGTCTGC
CATGGATTCA ACTGTGCAAA TTAACAAGAA ATGGAAGTTT ACGGATAGGT ATTTAAGTGA TGTTTAAAGA GCAATTTCTT
TGAAGTTTTA GCAAAAATCT ACTTAGAAGT GGGAGTTTGG CAACTGGAGA AAAAAAGTTT CCTACCTTCT TTGTTGGTTG
ATAATGGTAT ACGATATTCT TGGAAATTCT TAGAGAGGAG ATTGGGTGTA TCTGTAATGT ATCATATGCT GGACTGTTTG
GTCTTGTCAA ACTCTACACT CTTAATATGT TTCCCTTTTC TTTACTTTAA ATATAGAAAA ATGTTTCTGT CTCTTTATAG
CATGTATGTT TGCAAATTCT GGC

>Vigan.01G523200.01
ATGAGTCAGG AATCGTTTAT ATACAGCTTC GTGGCTCGGG GGACGGTGGT GTTAGCTGAG TACACCGAGT TCACCGGGAA
CTTCCCTGCA ATTGCAGCTC AGTGTCTCCA GAAACTACCC TCTTCCAATA ACAAGTTCAC CTACAATTGT GACCACCACA
CCTTCAATTT TCTCGTCGAA GATGGTTACG CTTACTGTGT TGTTGCCAAG GAATCTGTGA GCAAACAAAT CTCTATTGCT
TTCCTAGAAC GTGTCAAAGC GGACTTTAGG AAAAGATATG GGGGTGGAAA GGCTGACACA GCTGTTGCCA AAAGTCTCAA
CAAGGAGTTT GGACCAGTAA TGAAAGAGCA CATGAAGTAT ATAATAGACC ATGCTGAAGA GATTGAAAAG CTAATAAAAG
TGAAGGCTCA AGTTTCAGAA GTTAAGAGTA TCATGTTAGA GAACATTGAT AAGGCCATTG ATAGAGGAGA AAATCTAACT
ATTCTTGCCG ACAAGTCTGA GACATTGCAC TCACAAGCCC AGGAGTTCAG AAAGAAGGGA ACTCAAGTCC GTCGGAAGAT
GTGGTATCAG AACATGAAAA TTAAATTGGT TGTTCTTGGA ATTTTGTTGC TTTTGGTTCT GGTTATCTGG CTTTCTGTCT
GCCATGGATT CAACTGTGCA AATTAA

>Vigan.01G523200.01
MSQESFIYSF VARGTVVLAE YTEFTGNFPA IAAQCLQKLP SSNNKFTYNC DHHTFNFLVE DGYAYCVVAK ESVSKQISIA
FLERVKADFR KRYGGGKADT AVAKSLNKEF GPVMKEHMKY IIDHAEEIEK LIKVKAQVSE VKSIMLENID KAIDRGENLT
ILADKSETLH SQAQEFRKKG TQVRRKMWYQ NMKIKLVVLG ILLLLVLVIW LSVCHGFNCA N*